Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P05
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    27   7.7  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    27   7.7  

>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 561 ALTYNLPKRTFLCCLIFFF*YTIMRSNSLSTYDSEIL 451
           ALTY  P  +FLC LI  F +TI+   S+      I+
Sbjct: 34  ALTYITPHISFLCVLINLFHFTILTRKSMRNTSINII 70


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 217 NENLIINNTFAMCNKYK*INKKWHNQNFL 131
           +EN+I+  +   C KYK    KW    F+
Sbjct: 5   DENIILEGSLKRCKKYKLFKTKWVEHYFV 33


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 217 NENLIINNTFAMCNKYK*INKKWHNQNFL 131
           +EN+I+  +   C KYK    KW    F+
Sbjct: 5   DENIILEGSLKRCKKYKLFKTKWVEHYFV 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,680
Number of Sequences: 27780
Number of extensions: 223526
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)