Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P04
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   214   4e-56
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   3.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   3.7  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   4.8  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   4.8  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  214 bits (522), Expect = 4e-56
 Identities = 94/166 (56%), Positives = 119/166 (71%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTMPDKARRLGYRAKQGYV 216
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPT P+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
           ++R+               TYGKPK+HGVN+LK  ++ Q++AE             NSYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 397 VAQDSSYKYFEVILIDPSHNAIRRDPKITWIVNAVHKHREMRGLTS 534
           VA+DS+YK++EV+LIDP H AIRR+P   WI   VHKHRE RGLTS
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTS 166


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 406 DSSYKYFEVILIDPSHNAIRRDP-KITWIVNAVHKHREMR 522
           D  Y  F  +L D +    R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 406 DSSYKYFEVILIDPSHNAIRRDP-KITWIVNAVHKHREMR 522
           D  Y  F  +L D +    R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 WCQPTETHSQPAVYC*GACWSP 362
           WC P  T+ + A+YC  A ++P
Sbjct: 807 WCNPYSTNLRKAIYCGAAKYAP 828


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164  RCQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 334
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164  RCQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 334
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,094,105
Number of Sequences: 27780
Number of extensions: 239135
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)