Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P04
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 182 LALSGIVGLGARC 144
           L  SGIVG GA C
Sbjct: 412 LLFSGIVGFGAYC 424


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 182 LALSGIVGLGARC 144
           L  SGIVG GA C
Sbjct: 412 LLFSGIVGFGAYC 424


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 128 AS*LVCTALPGPRCQTRREGLDTVP 202
           +S L C  + GPR      G+D +P
Sbjct: 193 SSALACAIMLGPRLGRYDNGIDPLP 217


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 92  CDFSCV*ECGNIAS*LVCTALPGPRCQTR 178
           CD  C   C N+    +C  +  P C  R
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKICAPGCVCR 74


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 92  CDFSCV*ECGNIAS*LVCTALPGPRCQTR 178
           CD  C   C N+    +C  +  P C  R
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKICAPGCVCR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,558
Number of Sequences: 438
Number of extensions: 2871
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)