Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P01
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    28   3.0  
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    28   3.9  
U97012-6|AAK39147.1|  337|Caenorhabditis elegans Serpentine rece...    27   5.2  
Z68004-8|CAA91989.1|  218|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical...    27   9.1  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = -3

Query: 398 ACEIGIQIYVTCDRYGSFA*RISYYFLFIIFWYYVL*KTKSLSVCLFFRV 249
           AC+IG+ +++ C  +  ++  +S+ + + I  Y  L + K + + L   +
Sbjct: 87  ACKIGLSLFLPCITHSVWSLLLSFGYRYYILHYSALTRLKLVKIVLLILI 136


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 380 EFLFRTPKYPHAYLHDIISI 439
           + L  TP Y +AYLHD++ I
Sbjct: 214 DLLSTTPHYENAYLHDLVDI 233


>U97012-6|AAK39147.1|  337|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 15 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 404 ISACEIGIQIYVTCDRYGSFA*RISYYFLFIIFWYYVL*KTKSLSVCLF 258
           +S C IG+ +Y+    +  ++  IS+ F ++I  Y V  K K + + LF
Sbjct: 91  LSTCAIGLSMYIHTLTHSLWSLFISFVFRYLIL-YKVSLKEKHILLALF 138


>Z68004-8|CAA91989.1|  218|Caenorhabditis elegans Hypothetical
           protein F47B10.9 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 336 SLCERSIPVARDVNLNSYFARRNIRTR 416
           SL ++++    D N+ SYFA R I  R
Sbjct: 169 SLVDKAVAAISDANMRSYFAERIIHFR 195


>AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.17 protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 460 FCHSKRVYTDYVMKIRVRIFRRAK*EFKFTSRATGMDLSHNESVII 323
           F H K +    + K ++RIF+R K +  F S+     LS N+  ++
Sbjct: 407 FFHKKNIKMTKIKKRKIRIFQRKKTD--FFSKKIKKKLSKNDKFLV 450


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 441 FILIMS*RYACGYFGVRNRNSNLRHVRP---VWIFRITNQLLFPIYNFL 304
           F +I   RY+       N   NL  ++P   +W F  TN +  PIY+FL
Sbjct: 552 FHIIRELRYSQKLDPEDNDYWNLVRMKPWKKLWAFEQTNTVTIPIYHFL 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,253,140
Number of Sequences: 27780
Number of extensions: 195285
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)