Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O24
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    33   0.12 
U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone...    33   0.20 
AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear recep...    33   0.20 
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    27   7.6  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    27   7.6  

>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 568 CF-YYNILIQIHHLLETPTYN*-FAYYSDSLCCFSTIIYFFILYSTLYVKASSSLHYLLL 395
           C+ + NI+  +H LL  P +   F YY   L     ++ FFI++ST +  A  +    L+
Sbjct: 497 CYAFVNIICTLHSLLGAPNWRPRFKYYHWFLSLLGAVLCFFIMFSTHWDYAIVACLLCLV 556

Query: 394 TIKY 383
             KY
Sbjct: 557 IYKY 560


>U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 42 protein.
          Length = 356

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 592 CNLIHVDGCFYYNILIQIHHLLETPTYN*FAYYSDSLCCFSTIIYFFILYSTLYVKASSS 413
           CN   ++  F+ +I + + HLLET   +  +   + L C   ++  FIL+   Y   +S 
Sbjct: 142 CNYKRMNDVFFEDIKLVMEHLLETFKKSDISQEQEKLLCVHFMVP-FILFEGGYKSTNSD 200

Query: 412 LHYL 401
           L YL
Sbjct: 201 LFYL 204


>AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear receptor
           NHR-42 protein.
          Length = 358

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 592 CNLIHVDGCFYYNILIQIHHLLETPTYN*FAYYSDSLCCFSTIIYFFILYSTLYVKASSS 413
           CN   ++  F+ +I + + HLLET   +  +   + L C   ++  FIL+   Y   +S 
Sbjct: 144 CNYKRMNDVFFEDIKLVMEHLLETFKKSDISQEQEKLLCVHFMVP-FILFEGGYKSTNSD 202

Query: 412 LHYL 401
           L YL
Sbjct: 203 LFYL 206


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = -1

Query: 453 LYCIVLYMSKR--QAVCIIYY*QLNIVVIEY*LF*KKEHLMFTFFFVL---NSRLYFIKI 289
           LY IVLY+  R  QA         +++ +E  +F   + ++    F+L   NS  Y + +
Sbjct: 72  LYFIVLYLIVRDSQAYKTSVIISFSLIFVESYIFHVIQQIIHILLFLLAIANSIKYLLTL 131

Query: 288 KLRSEYIYILNKIQTI 241
           K  +  I++LN ++ +
Sbjct: 132 KFSNSQIFLLNLVKKL 147


>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
 Frame = -3

Query: 520 PTYN*FAYYSDSLCCFSTIIYFFI------LYSTLYVKASSSLHYLLLTIKYC-SN*ILI 362
           P Y  F  +  +L  FS   Y  I      L ST Y K  S +H+  LTI  C S  I++
Sbjct: 182 PCYYGFILFFHALLFFSMPFYIPIMISVRKLSSTQYCKVQSYIHWQTLTIFVCKSMAIVL 241

Query: 361 VLKERT-----LDVYVFFCIKLKII 302
           V+   T     +  Y F  + + I+
Sbjct: 242 VIYNNTFGSLPIGAYTFLILVMDIV 266


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 562 YYNILIQIHHLLETPTY--N*FAYYSDSLCCFSTIIYFFILYSTLYVKASSSLHYLLLTI 389
           +Y  ++   H++  P Y     A + +S   FST  YF I++  + + +   + +++L +
Sbjct: 13  FYTSMMHNFHIISFPLYIVTLNALFRESSQIFSTYKYFIIVHIIINIISECYVSFMMLPM 72

Query: 388 KY 383
            Y
Sbjct: 73  TY 74


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 487 SLCCFSTIIYFFILYSTLYVKASSSLHYLLLTIKYCSN*ILIVLKERTLDVYVF 326
           S C    I+Y F    +L +  S   +Y + T+ +C   +L V     + +Y+F
Sbjct: 122 SYCWLFNIVYIFHQDCSLQMSPSKKFYYEIFTMLFC---VLPVTSSLIVSIYLF 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,617,462
Number of Sequences: 27780
Number of extensions: 186608
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)