Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O23
         (287 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           27   1.8  
08_02_0464 - 17463066-17465136,17470821-17471650                       27   2.4  
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653...    26   4.2  
12_02_0745 - 22709630-22709815,22709895-22709993,22710088-227101...    25   9.8  
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531...    25   9.8  
04_01_0572 + 7404842-7405502,7405581-7406143,7406338-7406479,740...    25   9.8  
02_01_0363 - 2612873-2613814                                           25   9.8  
02_01_0357 - 2572267-2572785                                           25   9.8  

>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 115 LFSLISNSSEE-KCSK*MQLNLCRLTFHLRTMRTMKQRCYLVENPTLDLETYAG 273
           LF  + N  E+ K  + +Q NL   TFHL  +  +K  CY ++ P +  +T  G
Sbjct: 622 LFHAVENVMEQSKSLRLLQSNL-ENTFHLPKIAHLKHLCY-IDLPRISPDTICG 673


>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 115 LFSLISNSSEEKCS--K*MQLNLCRLTFHLRTMRTMKQRCYLVENPTLDLETY 267
           L   ++N   E+C+  K ++  +  L   L  M  + Q+C  +ENP + ++T+
Sbjct: 10  LLKKLTNLLVEECARLKGVRREIRFLRSELNNMHALLQKCAAMENPDIQVKTW 62


>07_03_1284 +
           25463476-25463557,25465088-25465220,25465307-25465378,
           25465476-25465544,25465629-25465700,25465792-25465860,
           25466155-25466220,25466299-25466364,25466452-25466786,
           25466931-25467214,25467796-25468067,25468152-25468287,
           25468625-25468755,25468890-25469046,25469185-25469327,
           25470105-25470190,25471530-25472962,25474563-25474712,
           25475221-25475322,25475467-25475568
          Length = 1319

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 114 IIFTYIKFQRRKMFEMNAAEPMQVDVPLEDNENNETEVLFSRE 242
           II T  K + +K   MN   P ++D+    +EN+ T   F+R+
Sbjct: 328 IISTIGKEELQKTVSMNLKPPTRIDLHKSIDENDVTSKSFTRK 370


>12_02_0745 -
           22709630-22709815,22709895-22709993,22710088-22710160,
           22710245-22710355,22710452-22710625,22710735-22710892
          Length = 266

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 IIFTYIKFQRRKMFEMNAAEPMQVDVPLEDNENNETE 224
           I+    + +RR++F+    +P +V+V + D    ETE
Sbjct: 52  ILMEIQRARRRRVFDTGFIDPRKVNVAMLDQYPQETE 88


>09_04_0008 +
           13651997-13652072,13652440-13652541,13653138-13653142,
           13653970-13654188,13654686-13654901,13654989-13655078,
           13656307-13656507
          Length = 302

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 83  SWFSTLTVESDYFHLYQIPAKKNVRNECS 169
           SW    +V S Y H+Y    +K V++E S
Sbjct: 185 SWAHMASVASAYHHMYDRSLEKVVKSETS 213


>04_01_0572 +
           7404842-7405502,7405581-7406143,7406338-7406479,
           7406605-7407436,7407546-7407729
          Length = 793

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 IIFTYIKFQRRKMFEMNAAEPMQVDVPLEDNENNETE 224
           I+    + +RR++F+    +P +V+V + D    ETE
Sbjct: 732 ILMEIQRARRRRVFDTGFIDPRKVNVAMLDQYPQETE 768


>02_01_0363 - 2612873-2613814
          Length = 313

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 198 EDNENNETEVLFSREPHLGFGDLC 269
           +D    E EV  S+  HLG G LC
Sbjct: 235 DDRRRRELEVYASQVVHLGGGKLC 258


>02_01_0357 - 2572267-2572785
          Length = 172

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 198 EDNENNETEVLFSREPHLGFGDLC 269
           +D    E EV  S+  HLG G LC
Sbjct: 94  DDRRRRELEVYASQVVHLGGGKLC 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,899,974
Number of Sequences: 37544
Number of extensions: 111021
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)