Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O21
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 223 CEWSHKSCVAEDSSPGCRGDQSC 155
           C+   K  V +D S  CR ++SC
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSC 152


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 223 CEWSHKSCVAEDSSPGCRGDQSC 155
           C+   K  V +D S  CR ++SC
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSC 152


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 399 VPSSLVMPGTPPLNNSCSHMPS 464
           +P+   M G PPL N    MP+
Sbjct: 420 IPNMSNMSGMPPLPNMPGSMPT 441


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 384 LERYSVPSSLVMPGTPPLNNSCSHMPSWVSPC 479
           +E Y   + +++P  PP+   C    S    C
Sbjct: 416 IEEYLPGNGVIIPDDPPIGCECKTCNSKTKCC 447


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 384 LERYSVPSSLVMPGTPPLNNSCSHMPSWVSPC 479
           ++R  +  S+  P T  LN  C+ +    S C
Sbjct: 334 VKREKIKISVSYPSTETLNTKCNTLERTPSKC 365


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 440 QQLFSYAILGFALSEAMGLFCLMMA 514
           Q L SYA+ GF L   M   C+ ++
Sbjct: 443 QLLDSYAVSGFCLLFLMFFECIAIS 467


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 440 QQLFSYAILGFALSEAMGLFCLMMA 514
           Q L SYA+ GF L   M   C+ ++
Sbjct: 496 QLLDSYAVSGFCLLFLMFFECIAIS 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,297
Number of Sequences: 438
Number of extensions: 2571
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)