Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O20
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   0.92 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   0.92 
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   3.7  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    25   3.7  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   4.9  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   6.5  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   6.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   8.6  

>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 152 SIKMATEVSVAPTSLPQLQSVQKVMA--LPTVGAAVEHVGAFYTKVKGAHSLLEWAL 316
           S ++    +V  T+LP ++   KV+   +  V   VEH G  +T V     +L W+L
Sbjct: 676 SYRIPLNDTVDVTTLPSIKFSNKVVKDNVVNVTVTVEHPGLIWTVVSFDADVLSWSL 732


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 65  ITLQVYHLILIIRNIQFFLYFVEQ*KLRSSIKMATEVSVAPTSLPQLQSVQKVMALPTVG 244
           I L   HL         FLY     +L  S ++  ++S+   S      V +++A+P +G
Sbjct: 22  IALYNNHLYFGTEGGDVFLYNFSNFQLNESPELVKKISLVSKS-----RVNRILAMPFLG 76

Query: 245 AAVEHVGAF 271
           A   H G+F
Sbjct: 77  AVFIHHGSF 85


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 56  RSLFENDKNFILLET 12
           RSL +NDKNFI++ T
Sbjct: 251 RSLSKNDKNFIMIPT 265


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 248 AVEHVGAFYTKVKGAHSLLEWALSTAEA 331
           A+E V +FYT +K + ++ ++A  + +A
Sbjct: 57  AIEKVNSFYTHLKSSQNVFDYAEKSLQA 84


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 ALPTVGAAVEHVGAFYTKV 283
           ALPT G  VEH+G    +V
Sbjct: 396 ALPTTGLIVEHIGRAVVRV 414


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 380 VEPTRRAPLLTQQEQHLLRQSI 315
           +EP  R PL  Q+++HL+  SI
Sbjct: 298 IEPWSRHPLDLQKQEHLVAHSI 319


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 203 LQSVQKVMALPTVGAAVEHVG 265
           L SVQK   +P +G++V H+G
Sbjct: 335 LSSVQKQQEIPWMGSSVIHLG 355


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 74  ATLSTDRSLFENDKNFILLE 15
           ++LS+ R LF N +N +LLE
Sbjct: 575 SSLSSPRFLFRNPRNHLLLE 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,706
Number of Sequences: 5004
Number of extensions: 32477
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)