Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_O19
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 248 4e-67
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 194 6e-51
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 148 5e-37
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 134 1e-32
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 130 1e-31
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 123 2e-29
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 115 5e-27
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 115 6e-27
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 112 4e-26
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 110 1e-25
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 108 5e-25
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 103 1e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 98 7e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 97 2e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 95 5e-21
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 93 4e-20
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 89 6e-19
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 87 2e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 85 1e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 79 4e-16
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 73 4e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 72 6e-14
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 72 6e-14
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 39 6e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 39 6e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 31 0.13
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.17
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.51
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 28 1.2
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 1.6
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 24 2.3
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 3.6
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 6.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 6.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 248 bits (608), Expect = 4e-67
Identities = 117/172 (68%), Positives = 138/172 (80%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 187
+Q Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTREL
Sbjct: 148 IQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTREL 207
Query: 188 AQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 367
A QIQQ ++FG SS +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D L+ TNL
Sbjct: 208 AVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNL 267
Query: 368 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNMAKRSKETCR 523
+R TYLVLDEADRMLDMGFEPQIRKI+DQIRPDRQT+M+S K + R
Sbjct: 268 RRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLAR 319
Score = 61.7 bits (143), Expect = 8e-11
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 489 ATWPKEVRKLAEDYLGDYVQITIGSLQLSANHNI 590
ATWPKEV++LA DYL DY+Q+T+GSL L+A+HNI
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNI 341
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 194 bits (474), Expect = 6e-51
Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 3/180 (1%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 187
+QAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTREL
Sbjct: 444 IQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTREL 503
Query: 188 AQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---T 358
A QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID L
Sbjct: 504 AVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRV 563
Query: 359 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNMAKRSKETCRGLFRR 538
TNL RCTYLVLDEADRM D+GFEPQ+ +II+ IRPDRQT+++S + + R + ++
Sbjct: 564 TNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKK 623
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 148 bits (359), Expect = 5e-37
Identities = 72/147 (48%), Positives = 99/147 (67%), Gaps = 3/147 (2%)
Frame = +2
Query: 26 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQ 196
P+ + K+L+G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQ
Sbjct: 281 PVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
Query: 197 IQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 376
IQ ++F R V GG EQ+ + +G IV+ATPGRL+D LE+ L +C
Sbjct: 341 IQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQC 400
Query: 377 TYLVLDEADRMLDMGFEPQIRKIIDQI 457
TY+V+DEADRMLDMGFE + KI+ +
Sbjct: 401 TYVVMDEADRMLDMGFEDDVNKILSSL 427
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 134 bits (323), Expect = 1e-32
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 17/182 (9%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG-------- 151
VQ PI SG++L+ AQTGSGKT ++ P + + + P P+ + G
Sbjct: 195 VQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKA 254
Query: 152 -PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 328
P L+LAPTREL QI + + +F S+VR V+GGA R Q R +++G +++ ATPG
Sbjct: 255 YPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPG 314
Query: 329 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR----PDRQTLMWSGNM 496
RL+D +++G +L +LVLDEADRMLDMGFEPQIR I++ +RQTLM+S
Sbjct: 315 RLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Query: 497 AK 502
+
Sbjct: 375 PR 376
Score = 32.3 bits (70), Expect = 0.055
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 489 ATWPKEVRKLAEDYLGDYVQITIGSLQLSANHNI 590
AT+P++++ LA D+L DYV +++G + S + NI
Sbjct: 372 ATFPRDIQLLARDFLKDYVFLSVGRVG-STSENI 404
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 130 bits (315), Expect = 1e-31
Identities = 67/153 (43%), Positives = 98/153 (64%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 187
+QA WP ++G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTREL
Sbjct: 191 IQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTREL 248
Query: 188 AQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 367
A Q + + + ++ V+GGAPK EQAR + ++I TPGRL+D + G+ +
Sbjct: 249 AIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDC 307
Query: 368 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD 466
+ YLVLDEADRMLD GFE IR II PD
Sbjct: 308 SQVGYLVLDEADRMLDTGFEQDIRNIISH-TPD 339
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 489 ATWPKEVRKLAEDYLGDYVQITIGSLQLSANHNI 590
ATWP+ VR LA +L D V+ITIGS +L+A+ NI
Sbjct: 353 ATWPESVRALAATFLKDPVKITIGSDELAASQNI 386
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 123 bits (296), Expect = 2e-29
Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRE 184
+Q + P+ ++ ++++G+AQTGSGKT A+ LP I + NN P A+VLAPTRE
Sbjct: 72 IQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRE 125
Query: 185 LAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGT 358
LA QI + G S VR+ + GG QA L + +++ TPGRL+D LE KG
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKG- 184
Query: 359 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNMAKRSKETCR 523
+L+ YL++DEADR+LDM F P I KI+ I +R+TL++S M + ++ R
Sbjct: 185 FSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQR 239
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 115 bits (277), Expect = 5e-27
Identities = 72/179 (40%), Positives = 114/179 (63%), Gaps = 6/179 (3%)
Frame = +2
Query: 5 EVQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPT 178
E+Q + P ++G++++G A+TGSGKTLA+++P I ++ P R G G I +++PT
Sbjct: 114 EIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPT 170
Query: 179 RELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--K 352
RELA QI VA E + V GGA +R +A L +GV +++ATPGRL+D L+ K
Sbjct: 171 RELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTK 230
Query: 353 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMWSGNMAKRSKETCR 523
G + LV+DEADR+L++GFE ++R+I+ +I P +RQTL++S + ++ R
Sbjct: 231 GFV-FRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSATQTTKVEDLAR 287
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 115 bits (276), Expect = 6e-27
Identities = 58/165 (35%), Positives = 95/165 (57%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 187
+Q + P+ + G+++VG+A+TGSGKT A+++P I H+ + AL+L+P REL
Sbjct: 95 IQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNREL 151
Query: 188 AQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 367
A Q +V +F + +R+ + GG EQ L +IV+ATPGR + + L
Sbjct: 152 ALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLEL 211
Query: 368 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNMAK 502
Y+V DEADR+ +MGF Q+ +I+ + RQTL++S + +
Sbjct: 212 SSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPR 256
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 112 bits (269), Expect = 4e-26
Identities = 61/174 (35%), Positives = 100/174 (57%), Gaps = 1/174 (0%)
Frame = +2
Query: 5 EVQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 184
++Q + P+A+ GK++VG A TGSGKT A+I+P + + +P ++ L+L PTRE
Sbjct: 284 QIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRE 341
Query: 185 LAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT-T 361
LA Q VA++ + + + GG + Q ++L + +IVIATPGR ID +
Sbjct: 342 LAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGF 401
Query: 362 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNMAKRSKETCR 523
++ +V+DEADRML+ GF ++ +II RQT+++S M + + R
Sbjct: 402 TVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIR 455
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 110 bits (265), Expect = 1e-25
Identities = 63/174 (36%), Positives = 99/174 (56%), Gaps = 1/174 (0%)
Frame = +2
Query: 5 EVQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 184
E+Q Q P A+ G++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRE
Sbjct: 64 EIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRE 122
Query: 185 LAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT- 361
LA Q + + G + GG +E+ L R + I++ TPGRL+ +++
Sbjct: 123 LAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNF 181
Query: 362 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNMAKRSKETCR 523
+ L+LDEADR+LDMGF + I+ + RQT+++S K K+ R
Sbjct: 182 DTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLAR 235
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 108 bits (260), Expect = 5e-25
Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 6/138 (4%)
Frame = +2
Query: 62 AQTGSGKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVASEFGN--- 226
AQTGSGKTLAY+LP + + P R G A+++APTREL QQI VA++ N
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 227 SSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEAD 403
S ++ + V GG K+ + + +GV I+I TPGRL D LE ++ + ++VLDE D
Sbjct: 245 SHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGD 304
Query: 404 RMLDMGFEPQIRKIIDQI 457
R++DMGFE + KI+ +
Sbjct: 305 RLMDMGFEETLTKILSYL 322
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 103 bits (248), Expect = 1e-23
Identities = 54/160 (33%), Positives = 88/160 (55%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 187
+Q + PIA+SG++++ A+ G+GKT A+++P++ ++ + + L+L PTREL
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTREL 124
Query: 188 AQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 367
A Q QV G V+ GG R+ L V IV+ TPGR++D KG +
Sbjct: 125 ALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADF 184
Query: 368 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 487
CT V+DEAD++L F P I +++ +RQ ++S
Sbjct: 185 SECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYS 224
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 98.3 bits (234), Expect = 7e-22
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Frame = +2
Query: 35 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAS 214
+ G+N +G A+TGSGKT A+ LP I + P G AL+L PTRELA QI + +
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFA 96
Query: 215 EFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL----EKGTTNLQRCTY 382
G + +++ + GG Q+ DL + +V+ATPGRL D + E+ L+R +
Sbjct: 97 ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKF 156
Query: 383 LVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLMWSGNM 496
LV+DEADR+L F + + DRQTL+++ +
Sbjct: 157 LVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATV 196
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 96.7 bits (230), Expect = 2e-21
Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRE 184
VQ++ P+A+ GK+LV A+TGSGKT AY++P + + Q I G AL+L PTRE
Sbjct: 40 VQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRE 99
Query: 185 LAQQIQQVASEFGN--SSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT 358
LAQQ+ V + S ++R V + Q L +IVIATP R + + G
Sbjct: 100 LAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGV 159
Query: 359 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSG----NMAKRSKETCRG 526
L + +LV+DEAD ML G+ ++ + + Q+ + S N+A K CR
Sbjct: 160 LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRN 219
Query: 527 LF 532
F
Sbjct: 220 PF 221
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 95.5 bits (227), Expect = 5e-21
Identities = 65/173 (37%), Positives = 92/173 (53%), Gaps = 10/173 (5%)
Frame = +2
Query: 8 VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 187
VQA P+ + K+LV A TGSGKTLAY+LP + + G G AL++APTREL
Sbjct: 27 VQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTREL 84
Query: 188 AQQIQQVASEF---------GNSSYVRNTCVFG-GAPKREQARDLERGVEIVIATPGRLI 337
A QI V E G V + + G G + A E+ +VI TPGRL
Sbjct: 85 ATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLN 144
Query: 338 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNM 496
+ L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+T ++S M
Sbjct: 145 EMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATM 195
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 92.7 bits (220), Expect = 4e-20
Identities = 53/151 (35%), Positives = 81/151 (53%)
Frame = +2
Query: 44 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 223
++++ AQ+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALG 111
Query: 224 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 403
+ V GG R+ L+ GV +V+ TPGR+ D +++ VLDEAD
Sbjct: 112 DLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEAD 171
Query: 404 RMLDMGFEPQIRKIIDQIRPDRQTLMWSGNM 496
ML GF+ QI I + P Q ++ S M
Sbjct: 172 EMLSRGFKDQIYDIFQLLPPTAQVVLLSATM 202
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 88.6 bits (210), Expect = 6e-19
Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Frame = +2
Query: 26 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQI 199
P A G +++G A TGSGKTLA+ +P + H +R D ALV+APTRELA QI
Sbjct: 154 PEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQI 208
Query: 200 QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQR 373
Q S +R + GG ++Q R L + +V+ATPGRL + + T N ++
Sbjct: 209 CQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKK 268
Query: 374 CTYLVLDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWSG----NMAKRSKETCRG 526
LVLDEADR+L ++ K+++ + RQT ++S + +R K+ +G
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKG 327
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 86.6 bits (205), Expect = 2e-18
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Frame = +2
Query: 44 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 223
+N V A+TG+GKTLA++L A + P +++L+PTRELA QI + A +
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT 136
Query: 224 NSSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDE 397
+ +R + GG K + + RG ++IATPGRL D L+ T +LDE
Sbjct: 137 YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDE 196
Query: 398 ADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSGNMAKRSKETCRGL 529
ADR++DMGF I I + + + + L +S M + RG+
Sbjct: 197 ADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGI 241
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 84.6 bits (200), Expect = 1e-17
Identities = 49/152 (32%), Positives = 79/152 (51%)
Frame = +2
Query: 41 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 220
G++++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V
Sbjct: 58 GRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLAL 112
Query: 221 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 400
G+ V+ GG + L+ G +V TPGR+ D + + + L+LDEA
Sbjct: 113 GDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEA 172
Query: 401 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSGNM 496
D +L+ GF+ QI I + P Q ++ S +
Sbjct: 173 DELLNQGFKEQIYDIYRYLPPGTQVVVVSATL 204
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 79.4 bits (187), Expect = 4e-16
Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 3/170 (1%)
Frame = +2
Query: 5 EVQAQ*WPIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 178
++Q + P+ +S +N++G +Q+G+GKT A+ L + ++ P P A+ LAP+
Sbjct: 139 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPS 193
Query: 179 RELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT 358
RELA+QI V +E G + V+ FG K + + +IVI TPG ++D +++
Sbjct: 194 RELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQ 249
Query: 359 TNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSGNMAKR 505
+ + VLDEAD MLD G Q +I + + Q +++S ++R
Sbjct: 250 LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 72.5 bits (170), Expect = 4e-14
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Frame = +2
Query: 26 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 205
P S ++L+ A TGSGKT+AY+ P + + P G A+++APTREL +QI +
Sbjct: 78 PTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYR 133
Query: 206 VASE--FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT 379
A + FG S + +E+A L ++ I TP RL+ ++ G + ++
Sbjct: 134 QAEKLSFGTSLKIIELSK-SNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVE 191
Query: 380 YLVLDEADRMLDMGFEPQIRKII 448
+ V+DEADR+ + GF Q I+
Sbjct: 192 FFVMDEADRLFEPGFIEQTDHIL 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 72.1 bits (169), Expect = 6e-14
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 6/179 (3%)
Frame = +2
Query: 5 EVQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTR 181
EVQ P ++ G +++ A++G GKT ++L + I P+ DG ++ LVL TR
Sbjct: 76 EVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTR 129
Query: 182 ELAQQIQQVASEFGNS-SYVRNTCVFGGAPKR---EQARDLERGVEIVIATPGRLIDFLE 349
ELA QI+ + F VR +GG + E +D + IV+ATPGRL +
Sbjct: 130 ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVR 189
Query: 350 KGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSGNMAKRSKETCR 523
+ + + VLDE D++L+ + I+++ P +Q +M+S ++ + C+
Sbjct: 190 EKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICK 248
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 72.1 bits (169), Expect = 6e-14
Identities = 43/150 (28%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Frame = +2
Query: 26 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 205
P+ G ++ A TGSGKTL+Y++P + ++++ R +V+ PTREL Q+ +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAK 223
Query: 206 VASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT-NL 367
+ + + ++ G R + L E ++++++TPGRL+D + + +L
Sbjct: 224 TFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSL 283
Query: 368 QRCTYLVLDEADRMLDMGFEPQIRKIIDQI 457
Q Y+V+DEADR+LD F+ + ++ +I
Sbjct: 284 QHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 47 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 223
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 47 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 223
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 284 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 460
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 461 PDRQT 475
QT
Sbjct: 195 ESLQT 199
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.17
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 35 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 193
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.51
Identities = 27/121 (22%), Positives = 52/121 (42%)
Frame = +2
Query: 44 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 223
+N++ TG GKT + A+V +N +R + +APT+ L Q + +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQQMEACYKIT 140
Query: 224 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 403
+ + G P + + + TP +++ ++ G + R + LV+DEA
Sbjct: 141 GIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199
Query: 404 R 406
R
Sbjct: 200 R 200
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.9 bits (59), Expect = 1.2
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Frame = +2
Query: 50 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNS 229
L+ VA+TGSGKT LP +H + +G+ I P R A VA+
Sbjct: 437 LLIVAETGSGKTTQ--LPQFLH---EAGYTKGNKKICCT-QPRRVAA---MSVAARVAKE 487
Query: 230 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI-DFLEKGTTNLQRCTYLVLDEA-D 403
VR G + + E A E+ V I T G L+ +FL + +L + +++DEA +
Sbjct: 488 MDVRLGQEVGYSIRFENATS-EKTV-IKYLTDGMLLREFLTE--PDLASYSVIIIDEAHE 543
Query: 404 RMLDMGFEPQIRKIIDQIRPDRQTLMWSGNM 496
R L + K I + RPD + L+ S +
Sbjct: 544 RTLHTDILFGLVKDIARFRPDLKVLISSATI 574
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 209 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 376
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 377 TYLVLDE 397
TY V E
Sbjct: 275 TYQVSGE 281
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 24.2 bits (50), Expect(2) = 2.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 362 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMW 484
NL + + + D + + F P I+ DR+TL+W
Sbjct: 313 NLNQRLHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVW 353
Score = 21.0 bits (42), Expect(2) = 2.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 542 CPNYYWITST 571
CPNY W +T
Sbjct: 391 CPNYNWTMAT 400
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 224 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 376
NS+YV+++C + K+ Q EIVIAT RL+ + T C
Sbjct: 16 NSNYVQSSCAASLSGKKAQ--------EIVIATESRLLIYKVDATDGRMNC 58
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 152 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 295
PI ++ +P E+ ++V + Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 2 HEVQAQ*WPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 124
+ +Q+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 279 NRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,067
Number of Sequences: 5004
Number of extensions: 53174
Number of successful extensions: 205
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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