Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O19
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      124   9e-31
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.9  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   6.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   6.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  124 bits (298), Expect = 9e-31
 Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 8/193 (4%)
 Frame = +2

Query: 8   VQAQ*WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAP 175
           VQ    PI M+G++L+  AQTGSGKT A+ +P I  +  +            P  ++++P
Sbjct: 222 VQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSP 281

Query: 176 TRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG 355
           TREL  QI Q   +F  +S ++    +GG     Q   L  G  I++ATPGRL+DF+EKG
Sbjct: 282 TRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKG 341

Query: 356 TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQ--IRP--DRQTLMWSGNMAKRSKETCR 523
                   +LVLDEADRMLDMGF P I K++D   + P  +RQTLM+S        +  +
Sbjct: 342 RVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATF----PDEVQ 397

Query: 524 GLFRRLCPNYYWI 562
            L RR   NY ++
Sbjct: 398 HLARRFLNNYLFL 410


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 186 LLNKYSRLLQNLAIHLMFVIHVCLEVPL 269
           L NK+  L + L IH+    ++ L+ P+
Sbjct: 613 LANKFESLSEPLRIHVSPTTYILLKYPI 640


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 432 KLGKLSTKYALIGKLLCGL 488
           K GK+   +A IG ++C L
Sbjct: 151 KRGKIMLSFAWIGSVVCSL 169


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 553 LLDHFNYLQII 585
           LL HFNY+++I
Sbjct: 161 LLKHFNYMKVI 171


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 166 SSSNKRTCSTNTAGCF 213
           SSS   TCS +T  CF
Sbjct: 285 SSSASTTCSGHTVRCF 300


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 352 GYYKLTKMH 378
           GYYKL K+H
Sbjct: 72  GYYKLNKIH 80


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 193 TNTAGCFRIWQFILC 237
           T+T GC   WQF  C
Sbjct: 120 TSTEGCEVAWQFGKC 134


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 193 TNTAGCFRIWQFILC 237
           T+T GC   WQF  C
Sbjct: 94  TSTEGCEVAWQFGKC 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,274
Number of Sequences: 438
Number of extensions: 3648
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)