Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O18
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   2.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    24   9.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    24   9.5  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 216 VMRLIIFKIIDFNFLIVKWGQISTFSDVFLNLFLKTFIIQMF 341
           ++ L I   ID N+L+     IS   +VFL++F  TF+ + F
Sbjct: 7   ILILYISLSIDNNYLVTTL--ISLKENVFLHIFTLTFLFKAF 46


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 275 APFHY*KIKINNFEYDETHHEMSEPRRCTRSRITNFVNTK 156
           APF   ++K+ NFE  E   + +E    + S   +  NT+
Sbjct: 85  APFGEGELKLENFENQENEADEAENEETSYSEQNHTENTE 124


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 272 PFHY*KIKINN--FEYDETHHEMSEPRRCTRSRITNF 168
           PF   K KI +   EY++ +  +SE   CT  RI +F
Sbjct: 142 PFEESKNKILDSIHEYEKHYTPLSEAEECTFVRIVDF 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 970,093
Number of Sequences: 5004
Number of extensions: 16795
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)