Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O18
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0032 + 9935414-9935602,9936129-9936392                           29   0.99 
01_05_0307 - 20701860-20702168,20702291-20703083,20703183-207032...    27   5.3  

>04_03_0032 + 9935414-9935602,9936129-9936392
          Length = 150

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 298 TSEKVLIWPHFTIRKLKSIILN---MMRRITRCQNHG 197
           T+EK L+   F I K KS ++     +RR T CQ HG
Sbjct: 40  TTEKELLAVVFAIDKFKSYLVGAKEFVRRCTSCQKHG 76


>01_05_0307 -
           20701860-20702168,20702291-20703083,20703183-20703278,
           20703391-20703518
          Length = 441

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 277 WPHFTIRKLKSIILNMM 227
           WPH  ++ LKS+ILN M
Sbjct: 325 WPHRKMKSLKSLILNEM 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,564,853
Number of Sequences: 37544
Number of extensions: 82105
Number of successful extensions: 175
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)