Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_O17
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 181 4e-46
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 42 5e-04
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 35 0.041
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 35 0.054
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432... 30 1.5
02_02_0598 + 12003994-12004317 29 2.0
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570 29 2.7
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 29 2.7
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 24 3.1
03_06_0359 + 33373096-33373761 29 3.5
11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178... 28 4.7
05_02_0156 + 7163756-7163834,7165447-7166225 28 4.7
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 28 4.7
03_06_0360 - 33375303-33375578,33375583-33375791,33375923-33375992 28 4.7
10_07_0138 + 13325418-13325954 28 6.2
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 28 6.2
04_03_0493 - 16533562-16533976,16534390-16534880 27 8.2
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397... 27 8.2
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 27 8.2
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 181 bits (440), Expect = 4e-46
Identities = 96/190 (50%), Positives = 125/190 (65%)
Frame = +3
Query: 9 DDQDSVRXXXXXXXXXXXXXXPPEDMEQLVMPTVRARAGDTSWRVRYMVADKFVELQQAV 188
DDQDSVR P+D ++P + + D SWRVRYMVA++ EL +AV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272
Query: 189 GPELARSDLAQIFQALLKDTEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLV 368
GPE +R L + LL+D EAEVR AAAGKV FC L + + ILP +K+L
Sbjct: 273 GPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSP----QLAIQHILPCVKELS 328
Query: 369 CDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIICNLECVNEV 548
D++QHV+SALASVIMG++P++G++ TIE LLP+FL+ LKDE P+VRLNII L+ VN+V
Sbjct: 329 SDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388
Query: 549 IGIQQLVQSL 578
IGI L QSL
Sbjct: 389 IGIDLLSQSL 398
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/156 (23%), Positives = 70/156 (44%)
Frame = +3
Query: 84 MEQLVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQALLKDTEAEVR 263
+ Q ++P + A D WRVR + + L +G L + L+D +R
Sbjct: 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLEDKVFSIR 453
Query: 264 AAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQ 443
AAA +K L + M I+PQ+ + + + + + + I L+P++G +
Sbjct: 454 DAAANNLK----RLAEEFGPEWAMQHIIPQVLEKINNPHYLYRMTILQAISLLAPVMGAE 509
Query: 444 NTIEHLLPLFLTQLKDECPEVRLNIICNLECVNEVI 551
T + LLP+ + KD P ++ N+ L+ + ++
Sbjct: 510 ITCQQLLPVVINSSKDRVPNIKFNVAKVLQALIPIL 545
Score = 44.4 bits (100), Expect = 7e-05
Identities = 41/162 (25%), Positives = 66/162 (40%)
Frame = +3
Query: 72 PPEDMEQLVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQALLKDTE 251
P EQLV VR D VR A K + + + P+LA + + L D+
Sbjct: 274 PEHSREQLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSDSS 332
Query: 252 AEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPI 431
VR+A A + L K ++ + L +KD D ++ S L V + +
Sbjct: 333 QHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV----NQV 388
Query: 432 VGRQNTIEHLLPLFLTQLKDECPEVRLNIICNLECVNEVIGI 557
+G + LLP + +D VRL II + + +G+
Sbjct: 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 41.5 bits (93), Expect = 5e-04
Identities = 32/139 (23%), Positives = 63/139 (45%)
Frame = +3
Query: 78 EDMEQLVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQALLKDTEAE 257
+++ ++M T+ + +S R + EL + +G + S + + Q L KD +A
Sbjct: 1840 KEIMPVLMDTLISSLASSSSERRQVAGRSLGELVRKLGERVLPSIIPILSQGL-KDPDAS 1898
Query: 258 VRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVG 437
R + + + K HQ M +++P I+ +CD+ Q V+ + L G
Sbjct: 1899 RRQGVCIGLSEVMGSAGK-HQLLSFMDLLIPTIRTALCDSTQEVRESAGLAFSTLYKSAG 1957
Query: 438 RQNTIEHLLPLFLTQLKDE 494
Q I+ ++P L L+D+
Sbjct: 1958 LQ-AIDEIVPTLLRALEDD 1975
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 380 PACQIGPRFRHYGPQPHRRPTEHNRAPPASVPDTIERRMP*GPFEHH 520
P G R+R P P R H+RAPP++ +RR P P HH
Sbjct: 17 PPASSGGRYRRRSPSPRR----HHRAPPSNPNPHRDRRTPDRPRRHH 59
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 34.7 bits (76), Expect = 0.054
Identities = 26/102 (25%), Positives = 48/102 (47%)
Frame = +3
Query: 213 LAQIFQALLKDTEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVK 392
L++I + KD+ EVR + + LD Q H I+ ++LP++ D+V D V+
Sbjct: 410 LSKIVDDISKDSCTEVRVST---INGLIYLLDNP-QSHEILKVLLPRLSDMVSDPALSVR 465
Query: 393 SALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNI 518
S+ +++ + + Q L L+ L ++ P V I
Sbjct: 466 SSAVDLLLAIRDLRSFQFNKVVGLGTLLSSLSNDHPRVAQKI 507
>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
4329925-4331469,4332220-4332429,4332563-4332713,
4332791-4333031,4333898-4333956,4334379-4334653,
4334813-4334955,4335034-4335088,4335181-4335258,
4335351-4335478,4335533-4335575
Length = 1173
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 529 KLQMMFKRTSGHSSFNCVRNRGRRCSIVFCRPTMGLRPIMTEARADLTCWLA 374
++QM + TS H + V + C IV PT I+ +A DL W+A
Sbjct: 960 EMQMSAESTSAHQGWRKVVDA--LCDIVSASPTKASAAIVLQAEKDLQPWIA 1009
>02_02_0598 + 12003994-12004317
Length = 107
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 143 DAPGGVSGTSSHRRHHQLLHVLGRQESRHRSARLGG 36
DAP VSG+S+ H+ L V R R RS R GG
Sbjct: 19 DAPASVSGSSADTDEHRGLKVALRHRGR-RSGRQGG 53
>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
Length = 508
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 121 PETPPGASGTWLPTSLLNCNK--LLVQNWLV-PIWPRYSRLC*RIRRPRSAPPLPG 279
P P T LP ++L+C LL N +V P R++RL PRS PP PG
Sbjct: 69 PVLPHALDLTRLPETMLDCRNGLLLAHNVVVNPATGRWARL------PRSPPPPPG 118
>01_06_0795 - 32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 29.1 bits (62), Expect = 2.7
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
Frame = -2
Query: 554 SDDFVHTLQVADDVQTDLRAFVF-QLCQEQRQEVLDCVLSADDGAEAHNDGSEGR----F 390
SDD L D+ D RA + Q Q Q + + LS+ EA S+ + F
Sbjct: 816 SDDDDVGLNAGDEAAIDPRANMSSQNTQHQGSSLENINLSSSVDCEAETITSKSKGSSLF 875
Query: 389 DMLVSITD*ILDLRQDHCHYNVFLMCLV*IHAEIFNLPGSGGADLGLRILQQSLEYLGQI 210
D+ + I IL + + L +HAE + PG+G ++ + Y Q
Sbjct: 876 DIGMEIRPTILSTESSMYERSSAKIGLRTVHAEFISNPGAGKGEVDSGAANKEFSYFSQT 935
Query: 209 GTSQFWTNS 183
+ ++ S
Sbjct: 936 ADTVIFSES 944
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 69 GEPPPQRTPRRPADAQN 19
GEPPP TPR DA N
Sbjct: 83 GEPPPLLTPRE-LDAHN 98
Score = 23.4 bits (48), Expect(2) = 3.1
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -1
Query: 240 SAEPGIS--GPNRNEPVLDQQLV 178
S PGIS P R EP LD+ LV
Sbjct: 33 SLVPGISLGEPQRGEPSLDEALV 55
>03_06_0359 + 33373096-33373761
Length = 221
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 155 NHVPDAPGGVSGTSSHRRHHQLLHVL 78
N V APGGV+ SH R +L+HV+
Sbjct: 100 NRVDLAPGGVNPLHSHPRAAELVHVI 125
>11_06_0728 +
26717018-26717306,26717494-26717598,26717789-26717870,
26717979-26718055,26719087-26719151,26719261-26719302,
26719385-26719444,26719583-26720203,26720315-26720450,
26720667-26720734,26720811-26720948
Length = 560
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 275 GSGGADLGLRILQQSL--EYLGQIGTSQFWTNSL 180
G+G ADLGL ++Q+ + YL G+ +W + L
Sbjct: 118 GAGIADLGLALVQKDMYNSYLNMYGSMVYWLSLL 151
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 401 RFRHYGPQPHR-RPTEHNRAPPASVPDTIERRMP*GPFEHHLQLGVCERSHRNTATS 568
R R P+P R RP H +AP +P RR+P G H + + ATS
Sbjct: 101 RRRAAPPRPRRLRPVGHRKAPGDPLPALRPRRLP-GRRRHECEAAPLAGEAKQCATS 156
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 419 PQPHRRPTE-HNRAPPASVPDTIERRMP*GPF 511
P P RRPT RAPP + T R MP G F
Sbjct: 25 PTPPRRPTTLSRRAPPRPLRATRRRLMPGGCF 56
>03_06_0360 - 33375303-33375578,33375583-33375791,33375923-33375992
Length = 184
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 140 APGGVSGTSSHRRHHQLLHVLGRQESRHRSARLGGQQTHRIL 15
APGG++ SH R +L+HV R R GG+ R+L
Sbjct: 71 APGGLNALHSHPRAAELVHVSSPYTRRVREH--GGEVLSRVL 110
>10_07_0138 + 13325418-13325954
Length = 178
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 43 RRALRWRLSCRPRTWSSW*CRRC 111
RR+ RWR C R SW RRC
Sbjct: 92 RRSRRWRSRCSRRWRRSWRRRRC 114
>01_06_1127 -
34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = +3
Query: 72 PPEDMEQLVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQAL 236
P ED+ + PT+ G W++R D ++ + + + ++F AL
Sbjct: 816 PREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELFTAL 870
>04_03_0493 - 16533562-16533976,16534390-16534880
Length = 301
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 277 PAAAARTSASVSFSRAWNIWAKSERASS 194
PA + R S + +F+ AW WA S SS
Sbjct: 214 PACSYRASNAAAFAAAWRKWASSLPRSS 241
>01_06_0480 +
29639124-29639412,29639476-29639552,29639639-29639749,
29639944-29640012,29640650-29640706,29640814-29640852,
29640957-29641061,29641158-29641240,29641333-29641414,
29641760-29641903,29641987-29642067,29642166-29642294
Length = 421
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 127 TPPGASGTWLPTSLLNCNKLLVQNWLVPIWP 219
TPP A +LP S ++ L+V+ +L WP
Sbjct: 75 TPPSALSWFLPRSAIDWFCLVVKKYLQEAWP 105
>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
Length = 132
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/65 (18%), Positives = 24/65 (36%)
Frame = -3
Query: 325 CS*CALSRFMQKSLTFPAAAARTSASVSFSRAWNIWAKSERASSGPTACCNSTNLSATMY 146
C CA++ + + F AA+ ++ + ++ W S+ C + Y
Sbjct: 56 CRCCAVNNYASRGSCFKCGAAKNDSAAAVAQGWGFSVASQAGWKNGDWICPRMECNVQNY 115
Query: 145 RTRQE 131
R E
Sbjct: 116 ANRTE 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,139
Number of Sequences: 37544
Number of extensions: 405770
Number of successful extensions: 1542
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -