Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O15
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   1.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   1.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.4  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -1

Query: 339 DLSPNCITMFPTIFRSAFVFNTTDLVFVSIRKSKIFWFFNPVTDTLLK*NNKRISSS 169
           +L  +C+ + P  F ++ ++   DL+ + I  +  +W+     + +    N ++SSS
Sbjct: 822 ELLKSCLFLLPRNFWNSKLYTRKDLISIHISLAMCYWWSKDHENAIKVLKNPKLSSS 878


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 429  YCILKLAQEIINCENINDIKVQLDSELENALRRDPDATAN 548
            YC+ +L   I+      D+ V++++ L    + DP A +N
Sbjct: 1214 YCLAELCFAILKSPKYKDVHVKVNAVLAGLQKNDPSAYSN 1253


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319  YTIRRQIKIVLRNLHSTSN*RRSCKVWI*F-KDGLHRCTA 435
            YT+ + +  +++ LHS +  RR  +V++ + KD + R T+
Sbjct: 1107 YTVEKLVTSIIKQLHSVTTNRRLAQVFMYYEKDRVQRRTS 1146


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 256 VNTKIKDFLVLQSGHGHIIKVKQQTHILVSQD 161
           +NT   DFL +Q     ++  K+Q  +++SQ+
Sbjct: 521 INTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 471  NINDIKVQLDSELENALRRDPDATANKPASEAK-QASIRLYSI 596
            NI+D  VQL+S L    R      AN+ AS  K Q   ++Y I
Sbjct: 2649 NIHDAPVQLNSILLENARGTLSEMANRVASHYKQQVGYQIYKI 2691


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 396  YFAAPTLVACAV*VPENNFDLSPNCITMFPTIFRSAFVFNTTD 268
            ++AA  L  C   V   N + +   I+    + R+AFV +T+D
Sbjct: 1217 FYAATCLKTCISEVMAENKEPAKYLISRISDLVRAAFVLSTSD 1259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,986
Number of Sequences: 5004
Number of extensions: 51799
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)