Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O15
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959...    27   8.6  
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...    27   8.6  
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597...    27   8.6  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    27   8.6  
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...    27   8.6  

>11_03_0071 -
           9589669-9590079,9592113-9592334,9592455-9592608,
           9592981-9593212,9593303-9593558,9593850-9593870
          Length = 431

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 474 INDIKVQL---DSELENALRRDPDATANKPASEAKQASI 581
           INDI  QL   D+E+EN   R P +   + +SE+K   +
Sbjct: 267 INDIIHQLNELDAEIENMFMRQPKSLLGQKSSESKYVGL 305


>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 3   TRIFCDGSLLVPCDMTDLDCLGHSTKVFLRKQVQASNSIISAP 131
           T IFCDG  +   D   LD +G+     +RKQ+     ++  P
Sbjct: 187 TEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELP 229


>07_03_0264 -
           15958690-15958910,15959410-15959484,15959547-15959775,
           15960312-15960587,15962109-15962369,15962632-15962781,
           15963555-15963591,15963958-15964024,15964228-15964291,
           15964643-15964812,15965046-15965124,15965576-15965733,
           15965862-15966030,15966531-15966602,15966977-15967018,
           15967245-15967488,15968782-15968963
          Length = 831

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 267 LVFVSIRKSKIFWFFNPVTDTLLK*NNKRISSSARTSKDDMNQGSMGRILYCLMPVLVFS 88
           L ++  +++ +  F    TD L+      IS   RT+ + +NQ     +L CL P L  S
Sbjct: 727 LNYLDRQEANMLIFVRAATDLLMPLPTSFISVRVRTAGEVVNQNLRLLVLVCLQPQLHAS 786

Query: 87  R 85
           +
Sbjct: 787 K 787


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 453 EIINCENINDIKVQLDSELENALRRDPDATA 545
           +I++C  ++D + QL  E E  LRR  D +A
Sbjct: 126 KIVDCGEVSDSQNQLKGEKEKKLRRTEDNSA 156


>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 3   TRIFCDGSLLVPCDMTDLDCLGHSTKVFLRKQVQASNSIISAP 131
           T IFCDG  +   D   LD +G+     +RKQ+     ++  P
Sbjct: 187 TEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELP 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,953
Number of Sequences: 37544
Number of extensions: 308192
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)