Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O14
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   116   1e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   116   1e-26
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    91   5e-19
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647...    31   0.73 
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497     28   3.9  
11_06_0254 - 21721667-21721718,21722025-21722647                       27   9.0  
02_05_1255 - 35279751-35280338                                         27   9.0  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  116 bits (279), Expect = 1e-26
 Identities = 56/111 (50%), Positives = 73/111 (65%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLTVPPPINQFTQTLDKT 361
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RL VPP +NQFT+TLDK 
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83

Query: 362 TAKGLFKILEKYRPETEAVRKERLTXXXXXXXXXXDEPSPKRPNTLRAGTN 514
            A  LFK+L KYRPE +A +KERL              + K+P  ++ G N
Sbjct: 84  LATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLN 133


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  116 bits (279), Expect = 1e-26
 Identities = 56/111 (50%), Positives = 73/111 (65%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLTVPPPINQFTQTLDKT 361
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RL VPP +NQFT+TLDK 
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67

Query: 362 TAKGLFKILEKYRPETEAVRKERLTXXXXXXXXXXDEPSPKRPNTLRAGTN 514
            A  LFK+L KYRPE +A +KERL              + K+P  ++ G N
Sbjct: 68  LATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLN 117


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 42/77 (54%), Positives = 55/77 (71%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLTVPPPINQFTQTLDKT 361
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RL VPP +NQFT+TLDK 
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84

Query: 362 TAKGLFKILEKYRPETE 412
                 ++L++ + E E
Sbjct: 85  LGCQKERLLKRAQAEAE 101


>06_03_1228 -
           28563546-28563630,28563897-28564000,28564256-28564759,
           28564854-28564932,28566053-28566130,28566227-28566268,
           28566352-28566449,28566542-28566673,28566757-28566879
          Length = 414

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 226 PANQRSIPFRAMAEIYSHPASKGCVTASSHSAAANQ 333
           P NQ   P      +Y+H AS G V    H   ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352


>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
          Length = 369

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 303 SVVSQCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 428
           +++   +R S++      K QP  C+RSW   G+  +Q G++
Sbjct: 74  TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114


>11_06_0254 - 21721667-21721718,21722025-21722647
          Length = 224

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +2

Query: 323 PPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLTXXXXXXXXXXDEPSPKRPNTL 499
           PP++ F Q  +K  A     ++  +RPE   V +E +             P+  +PN +
Sbjct: 98  PPMSGFAQEAEKERAGMSSTVMNGFRPEKVPVYRELVREFAVCDRWFASVPTSTQPNRM 156


>02_05_1255 - 35279751-35280338
          Length = 195

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 229 ANQRSIPFRAMAEIYSHPASKGCVTASSHSAAANQPVHPDIR*NHSQRSVQDLGEIQARN 408
           A +RS+ +  +  ++  PAS G   A++ +AA        +R   ++ + Q+L  +  R 
Sbjct: 89  AARRSVSYDTLVRLFRPPASGGSEDAAASTAAGG---GASLRSRTAEPAPQEL-RLFGRG 144

Query: 409 *GSQERASNESRRSQ-GC 459
            G +E      RR + GC
Sbjct: 145 AGRREEGGGRDRRDRYGC 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,931
Number of Sequences: 37544
Number of extensions: 256561
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)