Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O11
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    27   3.0  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   3.9  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   6.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.9  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.1  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   9.1  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 163 ERPMSRLRCDILRSDPETEMVCRHTFVHFTYPNV 62
           E P   L CD+L SDP  +     +  HF + NV
Sbjct: 249 EPPTHGLMCDLLWSDPLEDFGSEKSNKHFIHNNV 282


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 80  LYVPECISIGHDQCSTSNYCTNHD 9
           +Y P C  IGH+ C  S Y  N D
Sbjct: 801 VYPPVCGHIGHESCLRSWYFDNTD 824


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 544 DSSKRRTAICPHVRSRVLSAGLSTEAHHSDSTREQPSE 431
           ++SKR   + PH+  + L   LS E H +   ++  S+
Sbjct: 315 ENSKRLRKLHPHITHKELMKKLSDEYHRTKDAKQNVSK 352


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -1

Query: 461 LRFNARTTIRTKNYRILNSTIRSLGVVTYDRSYT*TLLSTADINTS 324
           LRF    +   K Y  L  T+ SL V + D S+T  LLST  I +S
Sbjct: 164 LRFEDNLSDLEKPYS-LGLTLYSLRVTSTDASFTEYLLSTDPIPSS 208


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 487 PKGHGSAREDRLRSSALRNHGVLHVRRSQRTKKNP 591
           P   G A + +L+S+   +  +  +RRS RT+ NP
Sbjct: 37  PSNSGVASKRKLQSTEWLDPELYGLRRSGRTRSNP 71


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 572 KEQKRIHQEIERQLRKDKRD 631
           KEQK+I ++   + RK+K+D
Sbjct: 300 KEQKKIRRQTRAEARKEKQD 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,945
Number of Sequences: 5004
Number of extensions: 56494
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)