Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O10
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    32   0.056
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    28   0.91 
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   2.8  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   4.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   4.8  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   6.4  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 31.9 bits (69), Expect = 0.056
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 493 GEFPETVRINETVVYSVDGLDE-DIEF 416
           GE PET +INET  +  +G D+ D EF
Sbjct: 107 GELPETAKINETDTFGAEGEDDLDFEF 133


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 472 RINETVVYSVDGLDEDIEFGD--EVSSEDEADAVDAI*L-TLYISFICTVDSCIFFTLY 305
           R N  +  +  G D  I+F D  E+SSED ADA++ I     Y   +  VD+C   +LY
Sbjct: 135 RSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLY 193


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 463 ETVVYSVDG-LDEDIEFGDEVSSEDEADAVDAI 368
           E   YS+ G  D+D + G +V  ED+   +DA+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAV 603


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 154 LISIAVSITNTNYSNSKK---NLTIGSWYKRQVSALTVN*FSVVLCYNRNF 297
           L+S+    T ++Y  S+    NLTI   YK+Q+S+L V    ++   N  F
Sbjct: 752 LLSLKQYTTLSDYLLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEF 802


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 451  YSVDGLDEDIEFGD-EVSSEDEADAVD 374
            Y++DGLD D E+   EV + DE +A++
Sbjct: 1026 YNMDGLDRDTEWKRVEVWTPDEGNAIN 1052


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 392 IF*TNFISKFNIFIQTINRIDNGLIDAYCF 481
           IF T        FIQ +N I++G+ D  CF
Sbjct: 138 IFATRLSPWLLFFIQGVNEIEDGVGDNLCF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,110
Number of Sequences: 5004
Number of extensions: 24949
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)