Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O10
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0256 + 13528331-13528765                                         33   0.097
02_02_0566 + 11567415-11567843                                         30   0.91 
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    29   2.8  
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286...    27   6.4  

>06_02_0256 + 13528331-13528765
          Length = 144

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 496 YGEFPETVRINETVVYSVDGLDEDIEFGDEVSSEDE 389
           YGE P+T+R+NE V   VDG ++  +  D +  EDE
Sbjct: 106 YGELPDTLRLNEGV--DVDGPEDGGDHDDYIQFEDE 139


>02_02_0566 + 11567415-11567843
          Length = 142

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 496 YGEFPETVRINETVVYSVDGL--DEDIEFGDE 407
           YGE P+ VR+NE VV   D    D+ I+F DE
Sbjct: 106 YGEIPDHVRLNEGVVDEDDAAAHDDYIQFEDE 137


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 498  LMENSPKQYASMRPLSILLMVWMKILN 418
            L  N P++ +  +PL +L+M+W+K+++
Sbjct: 1828 LTRNHPQEPSWKKPLDVLVMLWIKLID 1854


>04_04_1264 -
           32227812-32228114,32228199-32228349,32228454-32228691,
           32228786-32228996,32229077-32229270,32229334-32229450,
           32229580-32230522
          Length = 718

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 155 SNDMKQSERGLVIFLINCIQLILMLFCLY 69
           +++ K+  R LV+ L+  I  +LML C+Y
Sbjct: 317 TSEDKKKNRYLVVVLVTIIPCLLMLTCIY 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,962,701
Number of Sequences: 37544
Number of extensions: 126855
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)