Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O10
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-1|CAA93493.1|  253|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z69661-1|CAA93493.1|  253|Caenorhabditis elegans Hypothetical
           protein F48F7.3 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 484 PETVRINETVVYSVDGLDEDIEFGDEVSSEDEADAVD 374
           P  +  N  V+Y + G D D++  DE+ + ++   VD
Sbjct: 8   PAWLNENNAVMYFIVGTDIDVDIDDEIKTYEDIIQVD 44


>AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical
           protein C31B8.7 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 410 ISKFNIFIQTINRIDNGLIDAY 475
           ++KF I+I+ IN  D  LID+Y
Sbjct: 239 VNKFFIYIREINEYDRKLIDSY 260


>Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical
           protein T13H5.8 protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 460 TVVYSVDGLDEDIEFGDEVSSEDEADAVDA 371
           T+ Y V    + I+FG   + EDE D++D+
Sbjct: 370 TIAYKVTITWKGIKFGKHSTEEDETDSIDS 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,611,654
Number of Sequences: 27780
Number of extensions: 137281
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)