Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O09
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0520 + 18286435-18287279,18287818-18288697                       30   1.3  
08_02_1092 + 24267737-24268641,24269005-24269884                       28   4.1  
05_01_0143 - 944169-947273                                             28   4.1  
09_02_0389 - 8456957-8459917,8461941-8462267                           28   5.4  
11_01_0232 + 1794081-1795175,1796087-1796782                           27   7.1  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           27   7.1  
12_01_0731 - 6516894-6517473,6517485-6519574                           27   9.4  
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146...    27   9.4  
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090...    27   9.4  

>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 417 FNLCPRCVIS*VPSLTSTPGIEAKQRDTSLAACVNPA 307
           F+L  RC +S     ++ PG++A QR+ + A CV PA
Sbjct: 323 FDLSLRCSVSPTVIKSANPGLDALQRNNA-AYCVQPA 358


>08_02_1092 + 24267737-24268641,24269005-24269884
          Length = 594

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 417 FNLCPRCVIS*VPSLTSTPGIEAKQRDTSLAACVNPA 307
           F+L  RC +S     ++ PG +A QR+   A CV PA
Sbjct: 343 FDLSLRCAVSPTVVKSANPGPDALQRNNQ-AYCVQPA 378


>05_01_0143 - 944169-947273
          Length = 1034

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 351  AKQRDTSLAACVNPARKRSTSTLGFSDK 268
            AK++  SL ACVNPA ++  S + F  K
Sbjct: 1007 AKKKKPSLLACVNPALQKQHSDMVFFTK 1034


>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 429 AAAAGTDTPPASSTRGPGL 485
           AAA G   PP  S++GPGL
Sbjct: 14  AAADGNPAPPGESSKGPGL 32


>11_01_0232 + 1794081-1795175,1796087-1796782
          Length = 596

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -3

Query: 501 GKQLERGRGLGWSWPAEYRYRQQRRCISFNLCPRCVIS*VPSLTSTPGIEA 349
           G  L RG G G  + AE   R  R   +   CP C  S +PS  +TP  EA
Sbjct: 541 GDALRRGHGCGHRFHAECAERWLRVSAT---CPVCRDSPLPSPMATPLAEA 588


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 426 SAAAAGTDTPPASSTRGPGLSPTAF 500
           +AAA+    PP+ STR  G+ P+ F
Sbjct: 257 AAAASPQPPPPSRSTRAEGMDPSVF 281


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 23/74 (31%), Positives = 32/74 (43%)
 Frame = +1

Query: 202 IGES*YFGTDSSSPSQTKAPTTLVTEPKCGRGSLPSWIHARSQ*SVTLFGFYSWSGREAG 381
           +G S + G   SS SQ K+ + L        GS+PSWI   +  +V  F     SG    
Sbjct: 365 LGASGFSGVLPSSISQLKSLSLLEVSGLELAGSMPSWISNLTSLNVLKFFSCGLSGPIPA 424

Query: 382 YSANDTPWTQIE*Y 423
              N T  T++  Y
Sbjct: 425 SIGNLTKLTKLALY 438


>05_03_0293 -
           11813846-11813965,11814073-11814408,11814516-11814617,
           11814729-11814912,11815012-11815196,11815949-11816095,
           11816310-11816426
          Length = 396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 247 QTKAPTTLVTEPKCGRGSLP 306
           +TK P   +T P  GRG+LP
Sbjct: 110 RTKMPARFLTTPSAGRGTLP 129


>01_07_0106 -
           41107673-41107942,41108362-41108574,41108877-41109041,
           41109431-41109649,41110205-41110324,41110427-41110489,
           41111034-41111606,41111691-41111858,41112414-41112495,
           41112667-41112743,41113031-41113101,41114315-41114363
          Length = 689

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 320 HAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNDMQ 427
           H   +V    + + G++V+L   +++ + H+L+D+Q
Sbjct: 340 HVTEDVQNLKSKLNGLEVKLEEIILSEVKHKLSDLQ 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,281,553
Number of Sequences: 37544
Number of extensions: 323236
Number of successful extensions: 1086
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)