Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O09
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.     36   0.018
AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cel...    36   0.018
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   8.4  

>AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.
          Length = 173

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = +2

Query: 95  SRCSSVKGAP--------RINRCLDELKELMVSALQSEGENVAKLEKADILELTV 235
           SRC  +K  P        RIN+ L +LK++++          +K EKADILE+ V
Sbjct: 18  SRCKKIKNKPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cell
           lineage protein 22 protein.
          Length = 173

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = +2

Query: 95  SRCSSVKGAP--------RINRCLDELKELMVSALQSEGENVAKLEKADILELTV 235
           SRC  +K  P        RIN+ L +LK++++          +K EKADILE+ V
Sbjct: 18  SRCKKIKNKPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -3

Query: 183  SDCNALTISSLSSSKQRLMRGAPFTLEHRLHHFAILISARDGLRAVVRERIRDLVRHCSL 4
            SD ++++  S+ SS   ++   P T   +LH+         GL  ++RE +RD + +C L
Sbjct: 1037 SDTSSISSDSVYSSFNAMLENKPMTSLDKLHYII-------GL-GILREDLRDEI-YCQL 1087

Query: 3    C 1
            C
Sbjct: 1088 C 1088


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,136,001
Number of Sequences: 27780
Number of extensions: 240259
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)