Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_O08
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976... 64 3e-11
09_06_0083 + 20753191-20754480 29 1.2
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970... 29 2.0
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 28 3.6
05_06_0194 + 26287854-26288233,26289810-26290044 28 3.6
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 27 4.7
09_04_0294 - 16444565-16445137,16445999-16446256,16446609-164471... 27 4.7
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 27 4.7
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 27 6.2
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13... 27 8.2
10_01_0073 - 955746-955758,955811-956832 27 8.2
10_01_0072 - 918323-918335,918388-919409 27 8.2
07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903 27 8.2
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 27 8.2
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 27 8.2
04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003... 27 8.2
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468... 27 8.2
02_05_0090 - 25742533-25744557 27 8.2
02_02_0384 - 9585235-9585660,9585777-9586262,9586370-9586632,958... 27 8.2
02_02_0383 + 9579624-9579951,9580062-9580324,9580432-9580917,958... 27 8.2
02_01_0313 + 2097302-2097657,2099389-2100502 27 8.2
>04_04_0808 - 28196563-28196735,28197369-28197440,28197540-28197666,
28198362-28198430,28198517-28198583,28198751-28198872,
28199302-28199412,28199596-28199661,28200156-28200213,
28200307-28200343,28200420-28200513,28200967-28201032,
28201139-28201203,28201352-28201496,28201925-28202074,
28202266-28202335,28202752-28202828,28202919-28202987,
28203798-28203881,28204018-28204061,28204172-28204273,
28204420-28204618,28204672-28204727,28204886-28204958,
28205685-28205771,28205863-28205976,28206985-28207092,
28207183-28207278,28207722-28207787,28208130-28208222,
28208429-28208512,28208961-28209078,28209191-28209267,
28209459-28209641,28210542-28210636,28210903-28211053,
28212218-28212325,28212513-28212612,28212788-28212840,
28214022-28214102
Length = 1269
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/90 (32%), Positives = 56/90 (62%)
Frame = +3
Query: 42 VTATSYQVYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETGNNFTVNVFPYSVFYV 221
+ A++++ YH+ L DY ++M+AAR ++ +++ L M + FPYSVFY+
Sbjct: 901 IQASAFRTYHTPLNKQSDYVNSMKAARDFSSKMSKELQMQM-----------FPYSVFYI 949
Query: 222 FYEQYLTMWPDTLKSMGISVLSIFIVTFVL 311
F+EQYL +W + ++ + + ++F+V FV+
Sbjct: 950 FFEQYLGVWKTAIMNICVCLGTVFVVCFVV 979
>09_06_0083 + 20753191-20754480
Length = 429
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 108 WQSSSRGWSSARCGTPGMRSPSPS 37
WQ+S W+ +CG SPSP+
Sbjct: 159 WQASGEPWTGQQCGAAAPVSPSPT 182
>01_06_1221 -
35495427-35496542,35496650-35496839,35496988-35497061,
35497407-35497573,35497685-35498018
Length = 626
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 63 VYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETGNNFTVNVFPYSVFYVFYE 230
+ S++ T+ D+ S + + L + TL + T VN ++VF+ FYE
Sbjct: 411 IVSSIVSTASDFMSDFKTSYLTLTSPRATLVSQVIGTAMGCVVNPAVFTVFHHFYE 466
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 14 LHHQRYPGEGDGDLIP--GVPQRAEDQPRLLLCHASRSARGGQPHRDPQHELEGDG 175
L H P EG+G+ + G P A + ++ R + HR+ +L G+G
Sbjct: 49 LRHVAAPAEGEGEEVEDLGTPSAAAVAEAIRRASSASPVRFRRVHREENEKLRGEG 104
>05_06_0194 + 26287854-26288233,26289810-26290044
Length = 204
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 129 PRAERLAWQSSSRGWSS---ARCGTPGMRSPSPSPG 31
PRA RLA S+ R +SS A G G SP+P G
Sbjct: 5 PRAARLAALSAPRAYSSATAAAAGAGGSASPAPYGG 40
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 188 CEVVSRLL--QVHVEGLGEVGRHEPSGSH 108
C +V++++ QVHV G G VGR +G+H
Sbjct: 71 CSLVNKVMASQVHVVGEGTVGRAAFTGNH 99
>09_04_0294 -
16444565-16445137,16445999-16446256,16446609-16447106,
16449641-16449676,16451057-16451269,16451971-16452060,
16453627-16453851
Length = 630
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 110 ASRSARGGQPHRDPQHELEGDGKQLHSERVPLFSVLRVLRTVLDYVAGYVEI 265
A+ + GG P + P E G LH FS+LR R VL + + ++
Sbjct: 8 AAAAGGGGPPQQHPDVPRELLGVALHERPGLYFSILRAHRLVLQADSAFPQV 59
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 153 NMNLKETGNNFTVNVFPYSVFYVFYEQYLTMWPDTLKSM--GISVLSIFIVTFVLMGFDL 326
++ + + G+N + PY +F +YL+ + L+ G ++ + + FV +G++
Sbjct: 228 SLRMLKVGHNNIIGTLPYDLFSAISLEYLSFANNGLQGTINGALIIKLRNLVFVDLGWNR 287
Query: 327 FS 332
FS
Sbjct: 288 FS 289
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/64 (25%), Positives = 21/64 (32%)
Frame = +2
Query: 2 HEGQLHHQRYPGEGDGDLIPGVPQRAEDQPRLLLCHASRSARGGQPHRDPQHELEGDGKQ 181
H G HH + G G G G P R + + PH DP + +
Sbjct: 460 HHGHGHHHGHHGHGGGAAPAGYPAMGYGYGRPPMPYPMHYPMQPHPHADPYNYFSDENPN 519
Query: 182 LHSE 193
SE
Sbjct: 520 SCSE 523
>11_01_0019 +
135610-136296,136736-137275,137367-137518,137683-137959
Length = 551
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 59 PGVPQRAEDQPRLLLCHASRSARGGQPHRDPQ 154
P P+ D L HA+ AR Q HRD Q
Sbjct: 57 PPPPEEPSDASCALAVHAADLARAEQDHRDAQ 88
>10_01_0073 - 955746-955758,955811-956832
Length = 344
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +2
Query: 2 HEGQLHHQR---YPGEGDGDLIPGVPQRAEDQPRLLLCHASRSARGGQPHRDPQHELEGD 172
H Q HH R G +G +P P A + P + + +RS P + QH +
Sbjct: 57 HHHQPHHPRDCGANGNANGGAMP--PPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPRE 114
Query: 173 GKQLHS 190
K LH+
Sbjct: 115 HKALHN 120
>10_01_0072 - 918323-918335,918388-919409
Length = 344
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +2
Query: 2 HEGQLHHQR---YPGEGDGDLIPGVPQRAEDQPRLLLCHASRSARGGQPHRDPQHELEGD 172
H Q HH R G +G +P P A + P + + +RS P + QH +
Sbjct: 57 HHHQPHHPRDCGANGNANGGAMP--PPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPRE 114
Query: 173 GKQLHS 190
K LH+
Sbjct: 115 HKALHN 120
>07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903
Length = 606
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 18 ITNGTLAKVTATSYQVYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETGNNFTVNV 197
+ N LA S + LK S SA +A ++ + + LK+TG+ F VN+
Sbjct: 174 LENLNLANDVKVSTPIAFDALKQSSPP-SAGEFKDEIAQSVMKPMIDFLKQTGSYFMVNL 232
Query: 198 FPYSVF 215
+PY +
Sbjct: 233 YPYFAY 238
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 86 QPRLLLCHASRSARGGQPHRDPQHELEGDGKQLHSERVPLFSVLRVLRT 232
QP + L + RS R R E GDG ++ RVP S + VLRT
Sbjct: 502 QPGMALENLHRSKRDV---RRGLRERWGDGMEIEVSRVPKSSTVTVLRT 547
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 98 LLCHASRSARGGQPHRDPQHELEGDGKQLHSERVPLFSVLRVLRTVL 238
+L A+ G +D Q ELEGD ++ S LF LR LR +L
Sbjct: 184 MLAIAASVEEGHSASKDKQSELEGDAQKSQSSYEFLF--LRSLRMML 228
>04_04_0871 +
28898262-28898534,28899552-28900015,28900242-28900356,
28900510-28901157,28901282-28901374,28901658-28901795,
28902147-28902206
Length = 596
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 63 PGMRSPSPSPGYRW*CN 13
P + PS +PG RW CN
Sbjct: 51 PPLSQPSEAPGLRWTCN 67
>03_01_0640 -
4683970-4684481,4685197-4685343,4685606-4686764,
4686851-4686907
Length = 624
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 90 GWSSARCGTPGMRSPSPSPG 31
GWSS R TP R S SPG
Sbjct: 570 GWSSRRRPTPSSRRLSQSPG 589
>02_05_0090 - 25742533-25744557
Length = 674
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 44 HLRQGTVGDVIDPR 3
H RQGTV D +DPR
Sbjct: 576 HWRQGTVTDAVDPR 589
>02_02_0384 -
9585235-9585660,9585777-9586262,9586370-9586632,
9586743-9587070
Length = 500
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 LLLCHASRSARGGQPHRDPQHE-LEGDGKQLHSERVPLFSVLRVLRT 232
LLLCH S + G P+ +P H +G ++ +R+ F LR +R+
Sbjct: 16 LLLCHGSMAQLFG-PNVNPWHNPRQGGFRECRFDRLQAFEPLRRVRS 61
>02_02_0383 +
9579624-9579951,9580062-9580324,9580432-9580917,
9581034-9581459
Length = 500
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 LLLCHASRSARGGQPHRDPQHE-LEGDGKQLHSERVPLFSVLRVLRT 232
LLLCH S + G P+ +P H +G ++ +R+ F LR +R+
Sbjct: 16 LLLCHGSMAQLFG-PNVNPWHNPRQGGFRECRFDRLQAFEPLRRVRS 61
>02_01_0313 + 2097302-2097657,2099389-2100502
Length = 489
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 135 NLTETLNMNLKETGNNFTVNVFPYSVFY 218
+L T+ L +TG FTVN++P+ Y
Sbjct: 189 DLMLTIVKFLSDTGGAFTVNIYPFISLY 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,794,998
Number of Sequences: 37544
Number of extensions: 212057
Number of successful extensions: 872
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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