Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O08
         (424 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT009977-1|AAQ22446.1| 1287|Drosophila melanogaster RE56428p pro...   158   2e-39
AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein...   158   2e-39
AE014134-1780|AAF52874.2| 1287|Drosophila melanogaster CG5722-PA...   158   2e-39
AE014298-3064|AAF50873.1| 1223|Drosophila melanogaster CG12092-P...    94   6e-20
BT003320-1|AAO25080.1|  798|Drosophila melanogaster AT11823p pro...    29   3.4  
AY069327-1|AAL39472.2|  552|Drosophila melanogaster LD04591p pro...    29   3.4  
AE014297-4076|AAF56673.2|  980|Drosophila melanogaster CG6051-PA...    29   3.4  
X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protei...    28   4.5  
M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.     28   4.5  
AY075473-1|AAL68285.1|  356|Drosophila melanogaster RE33994p pro...    28   4.5  
AE014296-3194|AAF49126.2|  717|Drosophila melanogaster CG8780-PA...    28   4.5  
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ...    28   4.5  
AY089433-1|AAL90171.1|  583|Drosophila melanogaster AT25352p pro...    28   5.9  
AE014297-1299|AAF54639.2|  583|Drosophila melanogaster CG6744-PA...    28   5.9  

>BT009977-1|AAQ22446.1| 1287|Drosophila melanogaster RE56428p protein.
          Length = 1287

 Score =  158 bits (384), Expect = 2e-39
 Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 4/142 (2%)
 Frame = +3

Query: 9    VNYITNGTLAKVTATSYQVYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETG---- 176
            V Y  +     + A+ +  YH++LK+S DY+ A+ +AR ++AN+T+ L   L   G    
Sbjct: 1021 VRYSNSHERLNIEASYFMAYHTILKSSADYFLALESARKISANITQMLQGRLMSNGVPMA 1080

Query: 177  NNFTVNVFPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXX 356
            +  TV VFPYSVFYVFYEQYLTMW DTL+SMGISVLSIF+VTFVLMGFD+ SA       
Sbjct: 1081 SALTVEVFPYSVFYVFYEQYLTMWSDTLQSMGISVLSIFVVTFVLMGFDVHSALVVVITI 1140

Query: 357  XXXXXNLGGLMYWWGISLNAVS 422
                 NLGGLMY+W ISLNAVS
Sbjct: 1141 TMIVVNLGGLMYYWNISLNAVS 1162


>AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein
            protein.
          Length = 1287

 Score =  158 bits (384), Expect = 2e-39
 Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 4/142 (2%)
 Frame = +3

Query: 9    VNYITNGTLAKVTATSYQVYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETG---- 176
            V Y  +     + A+ +  YH++LK+S DY+ A+ +AR ++AN+T+ L   L   G    
Sbjct: 1021 VRYSNSHERLNIEASYFMAYHTILKSSADYFLALESARKISANITQMLQGRLMSNGVPMA 1080

Query: 177  NNFTVNVFPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXX 356
            +  TV VFPYSVFYVFYEQYLTMW DTL+SMGISVLSIF+VTFVLMGFD+ SA       
Sbjct: 1081 SALTVEVFPYSVFYVFYEQYLTMWSDTLQSMGISVLSIFVVTFVLMGFDVHSALVVVITI 1140

Query: 357  XXXXXNLGGLMYWWGISLNAVS 422
                 NLGGLMY+W ISLNAVS
Sbjct: 1141 TMIVVNLGGLMYYWNISLNAVS 1162


>AE014134-1780|AAF52874.2| 1287|Drosophila melanogaster CG5722-PA
            protein.
          Length = 1287

 Score =  158 bits (384), Expect = 2e-39
 Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 4/142 (2%)
 Frame = +3

Query: 9    VNYITNGTLAKVTATSYQVYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETG---- 176
            V Y  +     + A+ +  YH++LK+S DY+ A+ +AR ++AN+T+ L   L   G    
Sbjct: 1021 VRYSNSHERLNIEASYFMAYHTILKSSADYFLALESARKISANITQMLQGRLMSNGVPMA 1080

Query: 177  NNFTVNVFPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXX 356
            +  TV VFPYSVFYVFYEQYLTMW DTL+SMGISVLSIF+VTFVLMGFD+ SA       
Sbjct: 1081 SALTVEVFPYSVFYVFYEQYLTMWSDTLQSMGISVLSIFVVTFVLMGFDVHSALVVVITI 1140

Query: 357  XXXXXNLGGLMYWWGISLNAVS 422
                 NLGGLMY+W ISLNAVS
Sbjct: 1141 TMIVVNLGGLMYYWNISLNAVS 1162


>AE014298-3064|AAF50873.1| 1223|Drosophila melanogaster CG12092-PA
            protein.
          Length = 1223

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 45/130 (34%), Positives = 75/130 (57%)
 Frame = +3

Query: 33   LAKVTATSYQVYHSVLKTSHDYYSAMRAARLVAANLTETLNMNLKETGNNFTVNVFPYSV 212
            ++ V  + +  Y +   TS ++YS +R  R ++  +    N   KE  NN    +F Y V
Sbjct: 980  MSTVQDSYFMQYSTTSTTSEEFYSQLREVRRISGEI----NAMFKE--NNVDAEIFAYCV 1033

Query: 213  FYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXXXXXXXNLGGLMY 392
            FY++YEQYLT+W D + S+G+S+++IF+VT ++ G D+ S             N+ G+M+
Sbjct: 1034 FYIYYEQYLTIWGDAMFSLGMSLVAIFLVTLLITGLDITSTFIVLFMVICILINMLGMMW 1093

Query: 393  WWGISLNAVS 422
             W I+LNA+S
Sbjct: 1094 AWSINLNAIS 1103


>BT003320-1|AAO25080.1|  798|Drosophila melanogaster AT11823p
           protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 308 NKRHYEYG*HRYPHRFQRIRPH 243
           ++RH+ +  HR+PH+ Q  +PH
Sbjct: 393 HQRHHHHHHHRHPHQHQHRQPH 414


>AY069327-1|AAL39472.2|  552|Drosophila melanogaster LD04591p
           protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 308 NKRHYEYG*HRYPHRFQRIRPH 243
           ++RH+ +  HR+PH+ Q  +PH
Sbjct: 147 HQRHHHHHHHRHPHQHQHRQPH 168


>AE014297-4076|AAF56673.2|  980|Drosophila melanogaster CG6051-PA
           protein.
          Length = 980

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 308 NKRHYEYG*HRYPHRFQRIRPH 243
           ++RH+ +  HR+PH+ Q  +PH
Sbjct: 575 HQRHHHHHHHRHPHQHQHRQPH 596


>X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protein
            protein.
          Length = 1299

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = +3

Query: 198  FPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXXXXXXXNL 377
            +P  + ++F+EQY+T+       +   +L+  ++  +L+   +++A             +
Sbjct: 950  YPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSLLL-LSVWAAVLVILSVLASLAQI 1008

Query: 378  GGLMYWWGISLNAV 419
             G M   GI L+A+
Sbjct: 1009 FGAMTLLGIKLSAI 1022


>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = +3

Query: 198  FPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXXXXXXXNL 377
            +P  + ++F+EQY+T+       +   +L+  ++  +L+   +++A             +
Sbjct: 937  YPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSLLL-LSVWAAVLVILSVLASLAQI 995

Query: 378  GGLMYWWGISLNAV 419
             G M   GI L+A+
Sbjct: 996  FGAMTLLGIKLSAI 1009


>AY075473-1|AAL68285.1|  356|Drosophila melanogaster RE33994p
           protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -3

Query: 281 HRYPHRFQRIRPHSQVLFVEHVKH*IGEHVHCEVVSRLLQVH 156
           H +PH      PH       H  H +G HV    VS  +  H
Sbjct: 236 HHHPHTHAHSHPHPLAHPHAHSHHHVGHHVGAPPVSTAVTTH 277


>AE014296-3194|AAF49126.2|  717|Drosophila melanogaster CG8780-PA
           protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -3

Query: 281 HRYPHRFQRIRPHSQVLFVEHVKH*IGEHVHCEVVSRLLQVH 156
           H +PH      PH       H  H +G HV    VS  +  H
Sbjct: 236 HHHPHTHAHSHPHPLAHPHAHSHHHVGHHVGAPPVSTAVTTH 277


>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
            protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = +3

Query: 198  FPYSVFYVFYEQYLTMWPDTLKSMGISVLSIFIVTFVLMGFDLFSAXXXXXXXXXXXXNL 377
            +P  + ++F+EQY+T+       +   +L+  ++  +L+   +++A             +
Sbjct: 937  YPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSLLL-LSVWAAVLVILSVLASLAQI 995

Query: 378  GGLMYWWGISLNAV 419
             G M   GI L+A+
Sbjct: 996  FGAMTLLGIKLSAI 1009


>AY089433-1|AAL90171.1|  583|Drosophila melanogaster AT25352p
           protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 140 HRDPQ-HELEGDGKQL--HSERVPLFSVLRVLRTVLDYVAGYVEIDGDI 277
           H DPQ   ++  GK L  H  ++P      + +T+LDY +   +I  D+
Sbjct: 442 HDDPQLKRVQSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDITEDL 490


>AE014297-1299|AAF54639.2|  583|Drosophila melanogaster CG6744-PA
           protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 140 HRDPQ-HELEGDGKQL--HSERVPLFSVLRVLRTVLDYVAGYVEIDGDI 277
           H DPQ   ++  GK L  H  ++P      + +T+LDY +   +I  D+
Sbjct: 442 HDDPQLKRVQSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDITEDL 490


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,665
Number of Sequences: 53049
Number of extensions: 347857
Number of successful extensions: 1163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)