Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O06
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   235   3e-64
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   233   7e-64
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   167   9e-44
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.096
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.3  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  235 bits (574), Expect = 3e-64
 Identities = 108/119 (90%), Positives = 114/119 (95%)
 Frame = +1

Query: 10  VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
           VAGDSKNNPP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR G
Sbjct: 325 VAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNG 384

Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 366
           K+TE+NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 385 KTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  233 bits (571), Expect = 7e-64
 Identities = 108/119 (90%), Positives = 114/119 (95%)
 Frame = +1

Query: 10  VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
           VAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTG
Sbjct: 325 VAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTG 384

Query: 190 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 366
           K+TE+NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 385 KTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  167 bits (405), Expect = 9e-44
 Identities = 77/84 (91%), Positives = 80/84 (95%)
 Frame = +1

Query: 10  VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 189
           VAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTG
Sbjct: 36  VAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTG 95

Query: 190 KSTEDNPKSIKSGDAAIVNLVPSK 261
           K+TE+NPKSIKSGDAAIV L P+K
Sbjct: 96  KTTEENPKSIKSGDAAIVMLQPTK 119


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 0.096
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 336 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVN 443
           R RC+   ++ GS+ WQ  +SC    +  E  ++V+
Sbjct: 54  RGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVS 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 27   KQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSP 137
            K  TQ S  + + +     P S  +R HT  G+P  P
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQP 1084


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 360 HSLYYTDGDRLPHVTHGETTEGWEFLEG-LHTQGLGGNQVDNG 235
           H LYY D ++  +  + E    +E  +  L+TQ  G     NG
Sbjct: 276 HGLYYVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNG 318


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 KSTVVLVNQQRTTLNPLNLVM 232
           KST   V  +R T+NP ++++
Sbjct: 142 KSTTTTVEVKRDTINPEDVIL 162


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 285 LEGLHTQGLGGNQVDNGGITRFNGFRVV 202
           L  LHT  L  N++   G   FNG  V+
Sbjct: 382 LYNLHTLELSDNKLRTVGAQLFNGLFVL 409


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 533
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 167 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 202


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 533
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 162 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 197


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +3

Query: 3    TRRCRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRESRPS 182
            +R   +  K P   S  ++  S    S   N+ R     G+P    ++   RNQ++   S
Sbjct: 1256 SRGAAQMSKVPRDVSEGIYDGSGANGSFLDNLIRSSLETGIPRDQRAMTEARNQQQQASS 1315


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 205 NPKSIKSGDAAIVNLVPSKPLC 270
           NP+    G   +V L PS P C
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC 87


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 205 NPKSIKSGDAAIVNLVPSKPLC 270
           NP+    G   +V L PS P C
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,378
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)