Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O05
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +2

Query: 338 LFKAVDKDKSGYIAVKEFKLFFE-------CLGLHNDHAAVAFAAIDINGDGKLSFDEY 493
           +F   D++ +G +  +E + F E       C G +  H     +  D +GDGKL+ +E+
Sbjct: 241 MFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHM---ISYDDTDGDGKLNVNEF 296



 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 88  DVDNDGLISFNDFVLFAERFKSLGHLDEKQAKEFSDI 198
           D D DG ++ N+F +   +  S+  +   ++ E + I
Sbjct: 284 DTDGDGKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHI 320


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 28  KGFDRSEFWRRKMRTVHNILDVDND 102
           K F R E +     T+H+I  +D D
Sbjct: 94  KPFKRLELFNITTTTIHSIHSIDGD 118


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 290 SNDQTFKKKAHRWLPYL 340
           SN   FKK    W+ Y+
Sbjct: 318 SNSSDFKKLVDNWMTYM 334


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 112 RSARHCLHPGCCGRFAS 62
           R A   + P CCG+++S
Sbjct: 356 REAFKLMLPNCCGKWSS 372


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 290 SNDQTFKKKAHRWLPYL 340
           SN   FKK    W+ Y+
Sbjct: 318 SNSSDFKKLIDNWMTYM 334


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 PSFTYSSNDSLPSPL 460
           PS   SSN++LP P+
Sbjct: 51  PSTFGSSNEALPQPI 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 PSFTYSSNDSLPSPL 460
           PS   SSN++LP P+
Sbjct: 51  PSTFGSSNEALPQPI 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,802
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)