Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O04
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0306 + 22223514-22224095,22225426-22225638,22226310-222265...    26   9.7  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    26   9.7  
01_01_0427 - 3245999-3246193,3246281-3246480,3246572-3246676,324...    26   9.7  

>11_06_0306 +
           22223514-22224095,22225426-22225638,22226310-22226576,
           22227002-22227322
          Length = 460

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = -1

Query: 186 LVGIIRTVGGTVDIIGDEHLIRCTFENDHRGSLGRALRNRR*LENVISERKQTKQKSSS 10
           L  ++RTV    +++G E  ++     +H G +G     +    N+++  K+T  ++ S
Sbjct: 196 LKDVLRTVPEVRELVGKEEAVKLMGAKEHDGGIGVRSYLQSAFTNLMTASKETVSEAVS 254


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 205 SKFGQCFSRDNTNC 164
           S +GQCFSR  T C
Sbjct: 254 SNYGQCFSRPETRC 267


>01_01_0427 -
           3245999-3246193,3246281-3246480,3246572-3246676,
           3246968-3247052,3247958-3248325,3248405-3248639,
           3248807-3248968
          Length = 449

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 205 SKFGQCFSRDNTNC 164
           S +GQCFSR  T C
Sbjct: 145 SNYGQCFSRPETRC 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,419,511
Number of Sequences: 37544
Number of extensions: 128739
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)