Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_O03
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 0.78
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 25 1.4
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 2.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 3.1
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 24 4.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 5.5
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 23 5.5
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 23 5.5
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 23 7.2
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 23 7.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 23 7.2
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 23 9.6
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 23 9.6
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 23 9.6
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 0.78
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 55 IEDYKINKFYEVEITHINNPHSFYIRSTHCKSSEILEKC 171
+ED K N F EI+ N+ F + H KS I+ KC
Sbjct: 1583 LEDVKENSFRPHEISRFNSQSVFKSKKHHLKS--IVVKC 1619
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 1.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 254 PLRNVLQI*DLYTTVDPSNNSEIRAGLPHFSNISEDLQCVDR 129
PL N + + PS+ S +RA L ++ L VD+
Sbjct: 145 PLPNTSSVPSSVENIPPSDQSIVRAALETIQRVTRSLVLVDK 186
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 24.6 bits (51), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 171 TFFQYFRRFTMCRSNVKTMRIINMCYFYFIELVYFII 61
T + +R R + + +I +CY FI L +FII
Sbjct: 151 TPLSFLKRLDSLR-HTSVISLIALCYLVFIVLYHFII 186
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 3.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 218 TTVDPSNNSEIRAGLPHFSNISEDLQ 141
T+ +P + S +G P F N+S DL+
Sbjct: 19 TSENPPHTSNEYSGKPEFINLSPDLE 44
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 229 EICTPL*ILVTTRKLGQVCHIFPIFPKI 146
+IC L R LG+ +FPI KI
Sbjct: 460 DICQALIKATVLRNLGRTDEVFPILQKI 487
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 259 YYLSEMYYKSEICTPL*ILVTTR 191
+YL+++YY ++I L IL++ R
Sbjct: 1629 HYLTQLYYTADIVRNLWILLSQR 1651
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.4 bits (48), Expect = 5.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 133 STHCKSSEILEKCGRPALISELLLGSTVVYRSQICNTFLRG 255
ST SEILEK +P + + LL T VY Q F+ G
Sbjct: 201 STEDLRSEILEKIIKPTVPAHLLDEKT-VYHIQPSGRFVVG 240
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 23.4 bits (48), Expect = 5.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 85 EVEITHINNPHSFYIRSTHCKSSEIL 162
E+ I +NN HS Y + KS E L
Sbjct: 318 ELIIGEVNNEHSIYANTNPPKSKEDL 343
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 23.0 bits (47), Expect = 7.2
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -2
Query: 168 FFQYFRRFTMCRSNVKTMRIINMCYFYFIELVY---FIIFNKNILHIPSR 28
FF + C S++K +I + FY L+ F + + + L IP R
Sbjct: 188 FFPSYLILRKCNSSIKFRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFR 237
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 37 NMENIFIEDYKINKFYEVEITHINNPHSFY 126
N+ N + I + YE I ++NPH Y
Sbjct: 295 NLVNCKGHELPIKQLYENVIRRLDNPHIHY 324
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 23.0 bits (47), Expect = 7.2
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 162 QYFRRFTMCRSNVKTMRIINMCYFYFIELVYFIIFNKNI 46
+YF CR N + + C +F + F FN NI
Sbjct: 691 KYFSSSKFCRENFFYDKDVVYCMSFFSPHMDFNTFNLNI 729
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 22.6 bits (46), Expect = 9.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 174 ATFFQYFRRFTMCRSNVKTMRIINMCYFYFIELV 73
ATF + + FT + K + II++ YF ++
Sbjct: 147 ATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGIL 180
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 122 FTFDLHIVNLRKYWK 166
F L +VN+ KYWK
Sbjct: 75 FLIPLLLVNIAKYWK 89
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 162 GKMWQTCPNFRVVTRIYSGVQISDL 236
GK+WQ +V+ GV DL
Sbjct: 312 GKLWQATKTAQVIAEQCDGVDFLDL 336
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 124 YIRSTHCKSSEILEKC 171
Y+R H + EILE C
Sbjct: 218 YLRPKHVRDPEILEMC 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,138
Number of Sequences: 5004
Number of extensions: 20588
Number of successful extensions: 45
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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