Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_O03
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0251 + 14247293-14249926 29 0.39
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 29 0.67
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 28 0.89
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603... 28 1.2
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 27 2.1
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779... 27 2.7
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 27 2.7
02_03_0215 + 16505994-16506542,16506803-16507894 26 3.6
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 26 3.6
02_02_0701 - 13067547-13067580,13067725-13067864,13068525-130686... 26 4.8
01_05_0713 - 24548701-24549930 26 4.8
11_02_0038 - 7631462-7634428,7635975-7636250 25 6.3
>01_03_0251 + 14247293-14249926
Length = 877
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 98 HILIIRIVFTFDLHIVN--LRKYWK 166
H L ++I F FD H+VN + YWK
Sbjct: 427 HALAVKIGFIFDAHVVNGLIDSYWK 451
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 28.7 bits (61), Expect = 0.67
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 43 ENIFIEDYKINKFYEVEITHINNPHSFYIRSTHCKSSEILEKCGRPALISELLLGSTVVY 222
ENI++ + KIN F ++ + N + S H S +CG+ E+ ST V
Sbjct: 304 ENIYVTNKKINSFKKIARSMGYNGDDLQLVSLHSVSKGYYGECGKRGGYMEVTGFSTPVR 363
Query: 223 RS--QICNTFLRGNIIG 267
+I + L NI G
Sbjct: 364 EQLYKIASVNLCSNITG 380
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 28.3 bits (60), Expect = 0.89
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 133 STHCKSSEILEKCGRPALISELLLGSTVVYRSQICNT 243
+ H SSEI G S S VVYRS + NT
Sbjct: 290 ANHVDSSEITSSTGLEGCYSNYQSRSNVVYRSALANT 326
>02_03_0264 +
17059279-17059638,17060226-17060260,17060307-17060385,
17060580-17061123,17061328-17061404
Length = 364
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 159 YFRRFTMCRSNVKTMRII-NMCYFYFIELVYFIIFNKNILHIPSRATQEF 13
Y R F + + +I NMC F + E +FNK ++HIP RA+ F
Sbjct: 132 YQRFFHFAFDGIVYIELIENMCDFIYPE----DLFNKYLVHIPHRASFTF 177
>09_02_0071 -
3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 98 HILIIRIVFTFDLHIVN--LRKYWK 166
H L +I F FD H+VN + YWK
Sbjct: 427 HALAEKIGFIFDAHVVNGLIDSYWK 451
>09_04_0231 +
15875955-15876005,15876141-15876191,15877911-15877976,
15878073-15878134,15878639-15878717,15878839-15878943,
15879032-15879142,15879492-15879629,15879821-15879895,
15880011-15880131,15880196-15880350,15880605-15880679,
15881124-15881327,15881396-15881536
Length = 477
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 43 ENIFIEDYKINKFYEVEITHINNPHSFYIRSTHCKSSEILEKCGR 177
EN++ E+ + N F +V + + H I S H S +CGR
Sbjct: 250 ENVYTENKRFNSFKKVARSLGYDHHDLSIVSFHSVSMGYYGECGR 294
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 145 KSSEILEKCGRPALISELLLGS--TVVYRSQICNTFLR 252
K+S I++ C R + S + LGS TVV RS + N LR
Sbjct: 670 KASLIVKMCQRSQMPSAMALGSTLTVVDRSLVGNNTLR 707
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 94 ITHINNPHSFYIRSTHCKSSEILEKCGRPALISELLLGSTVVYRSQICNTFLRGNII 264
IT I N +RST K LE G+ ++ L L ++C F +G +
Sbjct: 406 ITQIQNLTKLKLRSTQLKLDLFLEVLGKLPHLAILRLWMNSFQSKELCFNFQQGTFL 462
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/36 (22%), Positives = 22/36 (61%)
Frame = +1
Query: 64 YKINKFYEVEITHINNPHSFYIRSTHCKSSEILEKC 171
+++NK++E + HI+ +FY + + ++++ C
Sbjct: 336 HRLNKYFEWNLRHIDATEAFYGATADSWNMKVVKPC 371
>02_02_0701 -
13067547-13067580,13067725-13067864,13068525-13068659,
13068761-13068808,13068834-13068859,13068990-13069057,
13069101-13069112,13070359-13070415,13070817-13070935,
13071700-13071810,13076755-13077066
Length = 353
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 141 MCRSNVKTMRIINMCYFYFIELVYFIIFNKNILH 40
+C++ V ++ M +FI +YF FN H
Sbjct: 164 LCQTVVSFTNLLKMYILWFISWIYFCCFNLGRKH 197
>01_05_0713 - 24548701-24549930
Length = 409
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 256 YLSEMYYKSEICTPL*ILVTTRKLGQVCHIFP 161
+L E YYK E+ P I RKL ++ + P
Sbjct: 312 FLREAYYKGELVEPNEIYAARRKLEELLMLNP 343
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 43 ENIFIEDYKINKFYEVEITHINNPHSFYIRSTHCKSSEIL 162
E +ED ++E+ H+ P FY CK ++L
Sbjct: 534 EGQLLEDTAEEYYHELICRHLLEPDPFYFDHYRCKMHDLL 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,538,809
Number of Sequences: 37544
Number of extensions: 106106
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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