Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_O03
(268 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81512-4|CAB04170.1| 550|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine re... 26 3.2
Z47812-12|CAE48507.1| 719|Caenorhabditis elegans Hypothetical p... 26 4.2
Z47812-11|CAA87796.1| 796|Caenorhabditis elegans Hypothetical p... 26 4.2
Z47811-6|CAE48505.1| 719|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z47811-5|CAA87788.1| 796|Caenorhabditis elegans Hypothetical pr... 26 4.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 25 7.4
AM748823-1|CAO72177.1| 491|Caenorhabditis elegans hexosaminidas... 25 9.7
AF039048-12|AAB94241.2| 296|Caenorhabditis elegans Hypothetical... 25 9.7
AC103567-3|AAL35732.2| 438|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z81512-4|CAB04170.1| 550|Caenorhabditis elegans Hypothetical
protein F25C8.4 protein.
Length = 550
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 115 HSFYIRSTHCKSSEILEKCGRPALISELLLGSTVVYRSQIC-NTFL 249
H F T + ++CG A++ LL G TVV C +TF+
Sbjct: 215 HEFRRGDTTLTMIPLHKQCGLDAILCALLNGLTVVTEKNFCVHTFM 260
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical protein
K02B12.5 protein.
Length = 1204
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 221 YTTVDPSNNSEIRAGLPHFSNI 156
Y+TVDPS E+ +G P NI
Sbjct: 1181 YSTVDPSLPQELHSGCPRALNI 1202
>AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine
receptor, class x protein65 protein.
Length = 293
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 102 MCYFYFIELVYFIIFNK 52
+CYFYF E + F+ F K
Sbjct: 142 LCYFYFDEEIRFLTFTK 158
>Z47812-12|CAE48507.1| 719|Caenorhabditis elegans Hypothetical
protein T05H10.7b protein.
Length = 719
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 76 KFYEVEITHI--NNPHSFYIRSTHCKSSEIL 162
KFY+ E T + NN + + THC ++E L
Sbjct: 216 KFYDQEDTGVTFNNNKDYLVFRTHCLAAEFL 246
>Z47812-11|CAA87796.1| 796|Caenorhabditis elegans Hypothetical
protein T05H10.7a protein.
Length = 796
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 76 KFYEVEITHI--NNPHSFYIRSTHCKSSEIL 162
KFY+ E T + NN + + THC ++E L
Sbjct: 293 KFYDQEDTGVTFNNNKDYLVFRTHCLAAEFL 323
>Z47811-6|CAE48505.1| 719|Caenorhabditis elegans Hypothetical
protein T05H10.7b protein.
Length = 719
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 76 KFYEVEITHI--NNPHSFYIRSTHCKSSEIL 162
KFY+ E T + NN + + THC ++E L
Sbjct: 216 KFYDQEDTGVTFNNNKDYLVFRTHCLAAEFL 246
>Z47811-5|CAA87788.1| 796|Caenorhabditis elegans Hypothetical
protein T05H10.7a protein.
Length = 796
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 76 KFYEVEITHI--NNPHSFYIRSTHCKSSEIL 162
KFY+ E T + NN + + THC ++E L
Sbjct: 293 KFYDQEDTGVTFNNNKDYLVFRTHCLAAEFL 323
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 194 SEIRAGLPHFSNISEDLQCVDR 129
+EI LPH SE L+ VD+
Sbjct: 879 AEIEKNLPHLKTFSEQLKFVDK 900
>AM748823-1|CAO72177.1| 491|Caenorhabditis elegans hexosaminidase
protein.
Length = 491
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 200 NNSEIRAGLPHFSNISEDLQCVDRM*K 120
N++ I G +++ED +C++RM K
Sbjct: 181 NSTRIHIGADEAYHVAEDQRCIERMEK 207
>AF039048-12|AAB94241.2| 296|Caenorhabditis elegans Hypothetical
protein F16B4.10 protein.
Length = 296
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 81 ELVYFIIFNKNILHIPSRAT 22
+ V FII KN+ HIP T
Sbjct: 137 DFVIFIICGKNLKHIPDSCT 156
>AC103567-3|AAL35732.2| 438|Caenorhabditis elegans Hypothetical
protein Y51F10.5 protein.
Length = 438
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 200 NNSEIRAGLPHFSNISEDLQCVDRM*K 120
N++ I G +++ED +C++RM K
Sbjct: 181 NSTRIHIGADEAYHVAEDQRCIERMEK 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,152,086
Number of Sequences: 27780
Number of extensions: 113242
Number of successful extensions: 315
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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