Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O03
         (268 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   2.0  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   2.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   4.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   6.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   8.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 142 CKSSEILEKCGR 177
           CK +EI EKC R
Sbjct: 370 CKFAEIKEKCDR 381


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 142 CKSSEILEKCGR 177
           CK +EI EKC R
Sbjct: 81  CKFAEIKEKCDR 92


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 160 LEKCGRPALISELLLGSTVVYRSQI 234
           ++KCGR  ++   +LG   + R +I
Sbjct: 128 VDKCGRLWILDTGILGEKQICRPKI 152


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 15  IPAWRVKEYGEYFY*RL*NKQVL*SRNNTY 104
           I  W V  YGE  Y    N+ V+ S    Y
Sbjct: 826 IVCWEVMSYGERPYWNWSNQDVIKSIEKGY 855


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 142 CKSSEILEKCGR 177
           CK ++I EKC R
Sbjct: 370 CKFADIKEKCDR 381


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 177 SATFFQYFRRFTMCRSNVKTMRI 109
           S T  + FR+      NV T+R+
Sbjct: 608 SGTISEKFRKLIRIEDNVATLRM 630


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 82  YEVEITHINNPHSFYIRST 138
           Y+  + H+N  H+   RST
Sbjct: 295 YQAFLKHLNTEHTLDDRST 313


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/12 (66%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
 Frame = -2

Query: 243 CITN-LRSVHHC 211
           CI   L SVHHC
Sbjct: 14  CIQQILESVHHC 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,313
Number of Sequences: 438
Number of extensions: 1330
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)