Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O02
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   0.67 
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   4.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.2  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    24   8.2  

>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -3

Query: 243 RLLSSYDSLLVFSYEIVFFINTIFIRPYRLNGQLKLNNFVD*HNCYKFSQIIIIFL 76
           RLL+  D L+ + Y     I  + +   R++  L + +F+D H+C+  S II++ L
Sbjct: 595 RLLT--DKLISYCYSSALHIVDLLVL-LRMHKFLSVYSFMDYHSCHAASFIILVHL 647


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 237  TDGNLISIDQKIPKNVGSLK 296
            TD  L+S+ +K+P+NV  LK
Sbjct: 1145 TDSVLLSMAKKLPRNVKELK 1164


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 256 LIKFPSVVIL*FLISFFLRNCVF 188
           ++ F S  IL FL  FFL  CVF
Sbjct: 144 IVYFSSFPILHFLFFFFLCVCVF 166


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 298 LDVRRTTKKRENTKDDLTR 354
           L V+ T K+R +TKD+ TR
Sbjct: 25  LRVKSTKKRRSSTKDEETR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,815
Number of Sequences: 5004
Number of extensions: 23676
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)