Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O02
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    28   1.7  
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   1.7  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    28   1.7  
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AC024847-8|AAF60857.1|  377|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 342 IFRVLPLFSCSSHVQFSGFPRFLVSFDQY*LSFRLLSSYDSLLVFSYEIVFFI 184
           +F+VL    C S   F+G   F++  D Y + F +  +   +L    +I+F++
Sbjct: 179 LFKVLRRLPCPSQEFFTGSNIFVLCIDDYHIQFLIAFTVLGVLAEVIQILFYL 231


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 204 KKKLIRNHKMTTDGNLISIDQKIPKNVGSL 293
           K+ +  NH +T   N+IS  Q++PK V +L
Sbjct: 162 KQDITENHFITAASNMISAGQELPKVVDTL 191


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 180 TIFIRPYRLNGQLKLNNFVD*HNCYKFSQIIIIFLSCVLNLY 55
           TIFI P+ +N  +  + F D  NC+     +++F++ +  L+
Sbjct: 401 TIFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLF 442


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 204 KKKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN*KEGEHER 341
           K K+I N       +LIS     P+N GS K GR  ++   G H+R
Sbjct: 78  KFKIIANEDNQDLVDLISKQSDGPRNKGSSKRGRRSSS-SAGYHQR 122


>AC024847-8|AAF60857.1|  377|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.1 protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 228 YDSLLVFSYEIVFFINTIFIRPYRLNGQLKLNNFVD*HNCYKFSQI 91
           +DS   F++ +  F N I + P + +G++ L+ F    +C+ FS++
Sbjct: 276 FDSTDDFTFVVQPFFNGITVPPLKPDGEVNLDWFAP--DCFHFSKL 319


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 336 RVLPLFSCSSHVQFSGFPR-FLVSFDQY*LSFRLLS-SYDSLLVFSYEIVFFINTIFI 169
           R L +     H  F+ F   F +    Y +S+ + S +Y   L FSY  V+F   IFI
Sbjct: 143 RTLQIIQTFIHRHFNSFYAIFAIKDALYIISWLVSSGNYQFWLEFSYMTVYFATLIFI 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,177,345
Number of Sequences: 27780
Number of extensions: 131089
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)