Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_O02
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   1.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.7  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 207 KKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN 317
           KKL+    + +D N+     K+ K  G  KT +E  N
Sbjct: 98  KKLVAECSVISDANIYIRFNKLVKCFGKYKTMKEVLN 134


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 207 KKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN 317
           KKL+    + +D N+     K+ K  G  KT +E  N
Sbjct: 98  KKLVAECSVISDANIYIRFNKLVKCFGKYKTMKEVLN 134


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 113 LCQSTKLFNFNCP 151
           LC + +LF + CP
Sbjct: 193 LCMAGRLFGYLCP 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,036
Number of Sequences: 438
Number of extensions: 1670
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)