Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N24
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 138 2e-33
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 29 2.6
U39852-4|AAK39262.2| 95|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 8.0
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 8.0
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 8.0
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 8.0
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 8.0
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 8.0
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 138 bits (335), Expect = 2e-33
Identities = 76/150 (50%), Positives = 93/150 (62%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 213
M +PK + IYEYLF EGV VAKKD++A HP++E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 214 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119
Query: 394 AYRRAPPAGAPHDKKADVGPGSADVEFRGG 483
AYR +K + GPG A V +R G
Sbjct: 120 AYRT--------EKVTEAGPGGAPV-YRAG 140
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = +1
Query: 235 YLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPP 414
Y T E R F +PPE+ A+L + T + A R +DR R+
Sbjct: 2371 YYTEEAAARARAF-GIPPEM--ASLSLRMETTQNAQTAFSAYQKMRREWKDRVYLARSRI 2427
Query: 415 AGAPHDKKADVGPGSADVEFRGGSRKRSIC 504
AG K D+ G +E++G + +C
Sbjct: 2428 AGLGLYAKVDISMGDFIIEYKGEIIRSEVC 2457
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = +1
Query: 235 YLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPP 414
Y T E R F +PPE+ A+L + T + A R +DR R+
Sbjct: 2371 YYTEEAAARARAF-GIPPEM--ASLSLRMETTQNAQTAFSAYQKMRREWKDRVYLARSRI 2427
Query: 415 AGAPHDKKADVGPGSADVEFRGGSRKRSIC 504
AG K D+ G +E++G + +C
Sbjct: 2428 AGLGLYAKVDISMGDFIIEYKGEIIRSEVC 2457
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFR-GGSRKRSIC 504
G G P AP + + ++ P +GAP AD PG+ + GG+ ++ IC
Sbjct: 232 GPAGSPGAPGGPGQPGAPGQKGP-SGAPGQPGADGNPGAPGQPGQAGGAGEKGIC 285
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 135 IWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQPTFH 13
+W F C+ V +S + +L+ R F+ QH+ +P H
Sbjct: 10 LWAFACLSVSISRRSEKGKCMLVPRERRHFFVQHVSRPHIH 50
>U39852-4|AAK39262.2| 95|Caenorhabditis elegans Hypothetical
protein K10C2.7 protein.
Length = 95
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 505 CRSTSSENLL*IQHQLNQGRHQPSYHEEL 419
C S+ S++L IQ+ N QP+ HEEL
Sbjct: 50 CGSSFSKSLAIIQNYQNNSTRQPTLHEEL 78
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFR-GGSRKRSIC 504
G G P AP + + + P +GAP AD PG+ + GG+ ++ IC
Sbjct: 232 GPAGSPGAPGGPGQAGAPGPKGP-SGAPGQPGADGNPGAPGQPGQSGGAGEKGIC 285
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFR-GGSRKRSIC 504
G G P AP + + + P +GAP AD PG+ + GG+ ++ IC
Sbjct: 232 GPAGSPGAPGGPGQAGAPGPKGP-SGAPGQPGADGNPGAPGQPGQSGGAGEKGIC 285
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFR-GGSRKRSIC 504
G G P AP + + + P +GAP AD PG+ + GG+ ++ IC
Sbjct: 232 GPAGSPGAPGGPGQAGAPGPKGP-SGAPGQPGADGNPGAPGQPGQSGGAGEKGIC 285
>Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical
protein C03D6.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 124 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 303
+HPD+ KIP ++ L Y ++F + W++ NE + + + P + +
Sbjct: 78 EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134
Query: 304 TLKRSVRTETVR 339
L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,464
Number of Sequences: 27780
Number of extensions: 230719
Number of successful extensions: 808
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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