Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N22
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 127 1e-30
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 118 4e-28
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 54 2e-08
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 32 0.057
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 29 0.40
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 0.70
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 27 1.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 2.1
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 2.8
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 2.8
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 26 3.7
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 25 4.9
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 6.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 6.5
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 25 6.5
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 8.6
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 127 bits (306), Expect = 1e-30
Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Frame = +2
Query: 8 ARVYRDDIGRNAVDAFRV--NVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVN 181
+R YR DI + V+ F + + Q +P ++ +I +++L A++K N +
Sbjct: 17 SRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSD 76
Query: 182 AAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFIT 361
A + FL K+ DV YF ++ EE+I++NFVL+YELLDEI+DFG+PQ ++T +L+ +IT
Sbjct: 77 AMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFPQTTETKILQEYIT 136
Query: 362 QQGIKSASNEEQAQITSQVTGQI*WRREGIKYRRNELFLDVLEYVNLL 505
Q S + ++ A +T I WR EGI YR+NE+FLDV+E VNL+
Sbjct: 137 Q---TSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLI 181
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 118 bits (285), Expect = 4e-28
Identities = 55/176 (31%), Positives = 104/176 (59%), Gaps = 10/176 (5%)
Frame = +2
Query: 11 RVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAM 190
+ +R D+ ++ + FRV ++ R P+ +I +++ + K ++++ A+TK N N +
Sbjct: 18 KTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMI 76
Query: 191 VFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQG 370
V EFL +I + YFGK++E +K+N I+ELLDE++D+G Q ++ L ++
Sbjct: 77 VLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGIIQTTEPDALARSVSITA 136
Query: 371 IKSASN------EEQAQI----TSQVTGQI*WRREGIKYRRNELFLDVLEYVNLLM 508
+K N +Q+ +S++ G + WRR GIKYR+N +++D++E +NLL+
Sbjct: 137 VKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIYIDIVERMNLLI 192
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 53.6 bits (123), Expect = 2e-08
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = +2
Query: 143 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 322
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+GY
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 323 QNSDTGVLKTFITQQGIKS---ASNEEQAQITSQVTGQI*WRREGIKYRRNELFLDVLEY 493
+ L+ + + A Q + + WR KY NE F+ VLE
Sbjct: 126 TCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLER 185
Query: 494 VN 499
V+
Sbjct: 186 VS 187
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 31.9 bits (69), Expect = 0.057
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 140 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 307
A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 64 AGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.40
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = -1
Query: 487 KYIQEQLIAPILNAFPTPSYLPSHLRCYLSLFLIGCRLYA--LLSDE---GLENSGIRVL 323
++I+E L IL+A PS+ + L +++ L +E G+E G+ L
Sbjct: 487 EFIEEYL--DILDALTRPSFKKCSNLAHRLLLQAITKIFCQWCLEEEPTWGVEKFGLVKL 544
Query: 322 WVTKVQDLIEQFID 281
WV K+ IEQF++
Sbjct: 545 WVEKIVSFIEQFLN 558
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 0.70
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +2
Query: 128 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 265
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +2
Query: 146 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 325
+++ +T N + L + V+ S + E I I+ DE GY
Sbjct: 64 LYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRD 123
Query: 326 NSDTGVLKTFITQQGIKSASNEEQAQ 403
N +KT++ + S+EE+ Q
Sbjct: 124 NVSLTQIKTYLEME-----SHEEKIQ 144
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 227 QSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQ 367
+ + KI EE +K N +L YE D +S ++KTF Q
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQ 998
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 2.8
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +2
Query: 50 AFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 229
+ RVN+ + +S +N + T+ +H++ + + +A+VFEF K +
Sbjct: 839 SIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVIP--VNNRYRSAVVFEF-RKQLQRKH 895
Query: 230 SYFGKI----SEENIKNNF-VLIY------ELLDEILDFGYP 322
+ F + E+N++ N V I+ +L ++DF +P
Sbjct: 896 NVFAMVWLVDLEDNVEQNIRVPIFTSSKPAHVLQNMIDFDHP 937
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 221 VMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 331
V++++ G+I+++ ++ V+IY + D L FG S
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARS 149
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 81 SKFVRRSRTSLVRPSSISSEQTSGLLR*QSKM*MLPWFLS 200
SK+V + S+ P+ ++S + LR + ++ M W +S
Sbjct: 57 SKYVACNSRSVTPPNDVASSVSKNTLRHKQRLMMAQWLMS 96
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 295 EQFIDEYKVVFDVLFRYLAEVRLHYINYLQQELKNHGSIHILLCYRSKPD 146
E F ++ FD L EVRL YI+ + Q + + + YR +PD
Sbjct: 878 EVFDSLQRLQFDALLLIRMEVRLQYIHSINQSVNLPDYV---VEYRGRPD 924
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 225 CSLTSARYLKRTSKTTLYSSMNCSMRSWTLVTHKT---LIPEFSRPSSLNKA*SLHPMRN 395
C L S Y+K++ + +Y + SW ++ T +P+ S + N + P +N
Sbjct: 119 CLLKSKNYIKKSLQEIVYLTNMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVMEPSQN 178
Query: 396 K 398
K
Sbjct: 179 K 179
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 23 DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVT-KQNVNAAMVFE 199
+D+G V + ++ Q S + + F H+ R +W ++ KQ AM
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQASLAADYSVKEFSHVSRLLLWHGRISYKQTSKLAMFVI 832
Query: 200 FLLKIIDVMQSYFGKIS 250
+I V Q + IS
Sbjct: 833 HRGLLISVCQVVYSVIS 849
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 349 LENSGIRVLWVTKVQDLIEQFIDEYKVVFDVLFRYLAEVRLHYINYLQQ 203
LE + I V V++ I++ ID+ DV+F +L+ + H++ L +
Sbjct: 245 LEETAIDVPAKDSVREDIQKLIDDLYENEDVMFIHLSILNSHFLPILDE 293
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 481 IQEQLIAPILNAFPTPSYLP--SHLRCYLSLFLIGCR 377
+Q + + P+L + S L HL+ YLSL+L C+
Sbjct: 73 LQFRELDPLLRRLSSTSLLAFTRHLKYYLSLYLPSCK 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,349
Number of Sequences: 5004
Number of extensions: 42421
Number of successful extensions: 161
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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