Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N22
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.79 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 422 QSPEMLSELVPHWMQTL 372
           + PE L EL+ HWM  L
Sbjct: 490 RQPEPLIELIEHWMPLL 506


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 17  YRDDIGRNAVDAFRVNVIHARQQVRSPV 100
           Y D+  R A+D F+  + +  ++ RSPV
Sbjct: 312 YSDEDLREAIDEFKTPMRNDSERNRSPV 339


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +1

Query: 52  LSCQCHPCAAASSFA 96
           L C C PC +   +A
Sbjct: 111 LECMCRPCTSVEEYA 125


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = +2

Query: 350 TFITQQGIKSASNEEQAQITSQVTGQI*WRREGIKYRRNELFLDVLEYVNLLM 508
           T ++ QGI     E  ++++   T +  WR           F+ +  Y+ +L+
Sbjct: 373 TKLSSQGILGEDVENNSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILI 425


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/27 (29%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 446 LPDAIIFAQSPEMLSELVPH-WMQTLC 369
           +PD +  A+  ++L+ +VPH +++ +C
Sbjct: 77  IPDVVEAAKDADILTFVVPHQFIKRIC 103


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 248 SEENIKNNFVLIYELLDEILDFGYPQNSDTGV 343
           S  N+ ++  +IYE      DFG  +  D  +
Sbjct: 29  SANNLAHSMKVIYEWKHIDFDFGSDERRDAAI 60


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 52 LSCQCHPCAAASS 90
          L C+CH C  A S
Sbjct: 41 LPCKCHLCGKAFS 53


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 4/10 (40%), Positives = 9/10 (90%)
 Frame = -2

Query: 93  ERTCCRAWMT 64
           ++ CCR+W++
Sbjct: 397 KKNCCRSWLS 406


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 4/10 (40%), Positives = 9/10 (90%)
 Frame = -2

Query: 93  ERTCCRAWMT 64
           ++ CCR+W++
Sbjct: 397 KKNCCRSWLS 406


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +2

Query: 140 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 259
           A  W+++VT+  + + +   FL+ I+D   S   +++E++
Sbjct: 337 APTWISSVTESVLKSKIGQVFLITILDSKVSARIEMNEDD 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,313
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)