Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N21
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 279 VGQRRRRGFDDLKTEAG 329
           VG+++R+ F DL  EAG
Sbjct: 311 VGEKKRQAFLDLLIEAG 327


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 354 IAEDVPRYRCLERP 395
           + E VPR+RC+  P
Sbjct: 141 VQEQVPRFRCIGPP 154


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 364 SSAICLCIQNRRPASVLRSSKPRRRRWPTY 275
           S   C     + P S   S + RRRR P Y
Sbjct: 388 SCVACSPPPRQTPPSRKESGRRRRRRTPRY 417


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 366 VPRYRCLERPKRE 404
           +PR+  +ERPK++
Sbjct: 345 LPRFLLIERPKKD 357



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +1

Query: 148 KNPEEAELEDTLNQVMVVFKYIEDKDVFQ 234
           + P   E+E T++    + ++ ++KD F+
Sbjct: 505 EKPLVREIEKTIDDARFIAQHAKNKDKFE 533


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 421 PCACGSSRLGRSRHRYRGTSSAICLCIQ 338
           PCA     +G+       ++ A+C+C++
Sbjct: 81  PCASKYCGIGKECELSPNSTIAVCVCMR 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,084
Number of Sequences: 438
Number of extensions: 2426
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)