Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N19
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   2.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   4.9  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   8.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   8.5  

>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -2

Query: 465 RSVHFHTTITLGNGRSMPPPIHPLVCQYGKVQSCPTRHELRPAGRAQHTTIVVTWVSD 292
           RS  +H  +   N   +     P   +Y    S  T++    A +A+H   VV W  D
Sbjct: 35  RSNRYHIHVPRPNPNQIINLYPPYEYKYNNTSSLCTKYIHTSANKARHVINVVRWTPD 92


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 110  DKLRRNSFCGLNKLINRQTIFR--TRITKMVRTSA 12
            D L  +   GLN+LI + TIFR   RIT+ V+ +A
Sbjct: 983  DLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNA 1017


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 492 PPXGEVSPARSVHFHTTITLGNGRSMP 412
           P   + +PA+S ++H+T+T    +S P
Sbjct: 37  PSVNKSNPAKSNYYHSTVTDDISKSQP 63


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 391 NQGVNGRWHRPSITQCNGCVEVD*SGRGDFSXWRGR 498
           N    G   RPS+ +  G  +    GRG +   RGR
Sbjct: 342 NSNTRGSSKRPSVNRSQGSGQRGRGGRGFYRGGRGR 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,038
Number of Sequences: 5004
Number of extensions: 45365
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)