Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N19
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0470 - 17551368-17552330,17552420-17552920 29 2.8
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 28 3.7
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587... 28 3.7
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 28 4.9
02_05_0570 + 30070338-30071606 28 4.9
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216... 27 6.5
06_03_1110 - 27676172-27676522,27676608-27676703,27676845-276769... 27 6.5
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373... 27 6.5
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 27 6.5
01_03_0113 - 12647599-12648052,12648078-12648319 27 6.5
12_02_0735 - 22636835-22639502,22639755-22640734 27 8.6
>08_02_0470 - 17551368-17552330,17552420-17552920
Length = 487
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 284 SPLSLTHVTTMVVCCARPAGRNSCLVGQDCTLPY 385
SPL H+ ++ CC A S +DC L Y
Sbjct: 238 SPLRHDHIVRLLGCCVAAATTTSSAEDEDCLLVY 271
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Frame = -2
Query: 483 GEVSPARSVHFHTTITLGNGRSMPPPIHP---LVCQYGKVQSCP-TRHELRPAGRAQHTT 316
GE P V H+ L + + PP + CQ +V HE+ QH
Sbjct: 487 GERDPTEKVVPHSLFKLASKLTPQPPFKAPSLIGCQLSQVSPFELASHEVPEI--QQHVQ 544
Query: 315 IVVTWVSDRGDYPE-HPNSQTLSLCIISIDVIMRTLHY 205
++ S G + HP S + L + S+ V RT HY
Sbjct: 545 SIID--SHSGSFGVWHPTSHSQGLSLKSLHVQQRTTHY 580
>02_05_0390 +
28557722-28557937,28558440-28558514,28558597-28558766,
28559046-28559124,28559320-28559516,28560300-28560387,
28560453-28560679,28560763-28560919,28561467-28561517
Length = 419
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 277 GVISPITDPRHHNGSVLCTACRPQFMP 357
G + D +HNG +C ACR Q +P
Sbjct: 118 GALVGTGDNENHNGGEVCYACRLQHLP 144
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 437 HWVMEGLCHRPFTPWFANTAKYSLALLGMN 348
HW ME H P + W+ NT+ LA G++
Sbjct: 175 HW-MELTLHLPSSDWYRNTSANDLAYWGLD 203
>02_05_0570 + 30070338-30071606
Length = 422
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 364 ARLYFAVLANQGVNGRWHRPSITQCNGC 447
A L A LA GV+G W RP +T GC
Sbjct: 337 AALAGAGLAESGVSG-WRRPFVTHFTGC 363
>12_01_0288 -
2160981-2161076,2161150-2161236,2161333-2161419,
2161641-2161726,2161805-2161908,2162618-2162704,
2162790-2162913,2163058-2163176,2163268-2163397,
2163583-2163671,2163804-2163892,2164579-2164672,
2164778-2164857,2164952-2165041,2166307-2166393,
2166495-2166539,2166966-2167042,2167120-2167225,
2167383-2167464,2167553-2167624,2168106-2168183,
2168259-2168349,2168826-2168979
Length = 717
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 469 GQISPLPHNHYTG*WKVYATAHSPLGL 389
G + LP TG W VY +A SPL L
Sbjct: 64 GYSAVLPEKLQTGKWNVYRSAKSPLKL 90
>06_03_1110 -
27676172-27676522,27676608-27676703,27676845-27676976,
27677518-27677622,27677946-27678119,27678361-27678430,
27678515-27678696,27678974-27679083,27679360-27679464,
27679570-27679648,27679808-27679848,27679931-27680009,
27680364-27680492
Length = 550
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 455 TSTQPLHWVMEGLCHRPFTPWFANTAKYSLALL 357
T T +VM+G TPW N SLA+L
Sbjct: 348 TGTYAGQYVMQGFLDLRMTPWIRNLLTRSLAIL 380
>02_05_0039 +
25335690-25335883,25335984-25336131,25337292-25337349,
25337652-25338116,25338435-25338575,25338694-25339934
Length = 748
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 254 KVCEFGCSG*SPLSLTHVTTMV 319
KV +FG S PL THV TMV
Sbjct: 551 KVSDFGASRSIPLDQTHVVTMV 572
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 452 STQPLHWVMEGLCHRPFTPW 393
S P+HW H P TPW
Sbjct: 55 SVDPIHWPKMETSHEPQTPW 74
>01_03_0113 - 12647599-12648052,12648078-12648319
Length = 231
Score = 27.5 bits (58), Expect = 6.5
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Frame = -2
Query: 495 SPPXGEVSPARSVHFHTTITLGNGRSMPPPI----HPLVCQYGKVQSC---PTRHELRPA 337
SPP SP + T T R+ PPP+ L V +C P +H A
Sbjct: 43 SPPPPPASPPSAASPPATSTASRSRTCPPPLALRRSQLRGSAAPVVNCICVPLKHSFDRA 102
Query: 336 G---RAQHTTIVVTWVSDRGDYPEHPNSQTLSLCIISIDVIMRTL 211
RA I+ W S D E P +T L + +D+ L
Sbjct: 103 SYIVRAPWGDILQVWRSFELDDGEEP--RTYELAVFKLDLATEDL 145
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 495 SPPXGEVSPARSVHFHTTITLGNGRSMPPPIHPLVCQYGKVQSCPTR 355
+P VSP RS + G+G + P P H L +Q P R
Sbjct: 11 APVTVAVSPVRSPGGDAVVRRGSGLTSPVPRHSLGSSTATLQVSPVR 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,293
Number of Sequences: 37544
Number of extensions: 335290
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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