Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N19
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   4.4  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 505 YISVPSXRRSLPGQISPLPHNHYTG*WKVYATAHSPLGLP 386
           Y+  P+ +   PG +S  P N   G ++ +    +PL LP
Sbjct: 774 YLHAPNNKELFPGTVSVQPRNILYGDFREWLETTTPLTLP 813


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 505 YISVPSXRRSLPGQISPLPHNHYTG*WKVYATAHSPLGLP 386
           Y+  P+ +   PG +S  P N   G ++ +    +PL LP
Sbjct: 774 YLHAPNNKELFPGTVSVQPRNILYGDFREWLETTTPLTLP 813


>Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical
           protein T23D8.9b protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -2

Query: 498 PSPPXGEVSPARSVHFHTTITLGN-----GRSMPPPIHPLVCQY 382
           PSP  G  +PA++  F T   + N      +S  PP+ P V  Y
Sbjct: 93  PSPSRGPAAPAQNQKFRTEQWINNQAWPYSQSPAPPVAPSVMSY 136


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -2

Query: 498 PSPPXGEVSPARSVHFHTTITLGN-----GRSMPPPIHPLVCQY 382
           PSP  G  +PA++  F T   + N      +S  PP+ P V  Y
Sbjct: 93  PSPSRGPAAPAQNQKFRTEQWINNQAWPYSQSPAPPVAPSVMSY 136


>Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical
           protein F07A5.3 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 483 GEVSPARSVHF-HTTI--TLGNGRSM-PPPIHPLVCQYGKVQSCP 361
           G +  ++S++F H     +L NG  + PP + PLVC  G++Q  P
Sbjct: 378 GSIDCSKSINFCHACCDGSLYNGTYLLPPGMFPLVCYPGRLQPTP 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,445
Number of Sequences: 27780
Number of extensions: 269240
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)