Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N18
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    59   9e-11
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    36   6e-04
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    23   4.2  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    23   5.5  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 58.8 bits (136), Expect = 9e-11
 Identities = 28/47 (59%), Positives = 34/47 (72%)
 Frame = +3

Query: 9   ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDVAAFKEF 149
           A + FE  +EGYLAKILI  GTK VPVGK L + V+N+ DVAA  +F
Sbjct: 95  AQIDFEQQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDVAAMADF 141


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 36.3 bits (80), Expect = 6e-04
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +3

Query: 9   ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDVAAFKEFKDDS 161
           ATM  E  + G LAK+LI  G+  +PVGK + I+   ++++   +  KD++
Sbjct: 77  ATMDVEVQDNGILAKVLIEKGS-NIPVGKNIAIVADAEDNLKDLELPKDEA 126


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 97  SFPTGTPFVP 68
           S PTGTPFVP
Sbjct: 201 SKPTGTPFVP 210


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 35  RRLLGEDLNPGWHERRSCRKAPMYNCAK 118
           +R  GE ++PG  ER   +  P+YN  K
Sbjct: 310 KRSAGEVVHPGETERVKNQGMPIYNLHK 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,415
Number of Sequences: 5004
Number of extensions: 14901
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)