Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N18
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 50 2e-07
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 49 4e-07
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 47 2e-06
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 46 4e-06
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 38 0.001
05_06_0001 + 24769633-24770148 27 1.6
01_05_0610 - 23636097-23638958 26 3.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 26 4.8
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885... 26 4.8
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 26 4.8
12_02_1080 - 25911521-25911922 25 6.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 25 6.3
02_02_0404 + 9876703-9877314,9877599-9877838,9877951-9878073,987... 25 6.3
11_01_0667 + 5436764-5437384,5437684-5437923,5438037-5438159,543... 25 8.4
07_03_0301 + 16449586-16449671,16450028-16451135 25 8.4
01_05_0513 - 22864657-22867899 25 8.4
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +3
Query: 9 ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDVAAFKEFKDDS 161
AT+ E EEGYLAKI+ G K + VG+++ + V+ +ED+ FK++K S
Sbjct: 118 ATVEMECMEEGYLAKIIHGDGAKEIKVGEIIAVTVEEEEDIGKFKDYKAPS 168
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 49.2 bits (112), Expect = 4e-07
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +3
Query: 9 ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDV 131
AT+ FE+ EEGYLAKIL P G+K V VG+ + + V++ ED+
Sbjct: 193 ATLEFESLEEGYLAKILAPEGSKDVQVGQPIAVTVEDLEDI 233
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +3
Query: 9 ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDVAAFKEFK 152
AT+ E EEGYLAKI+ G+K + VG+++ + V+ + D+ FK++K
Sbjct: 160 ATVEMECMEEGYLAKIIHGDGSKEIKVGEIIAVTVEEEGDIKKFKDYK 207
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 46.0 bits (104), Expect = 4e-06
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +3
Query: 9 ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDVAAFKEFK 152
AT+ E EEGYLAKI+ G K + VG+++ + V+ + D+ FK++K
Sbjct: 1663 ATVEMECMEEGYLAKIIHGDGAKEIKVGEIIAVTVEEEGDLEKFKDYK 1710
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/43 (34%), Positives = 29/43 (67%)
Frame = +3
Query: 9 ATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVQNKEDVAA 137
A M ET +G+LA +L+PAG + PVG + ++ ++++++ A
Sbjct: 91 ADMDVETFHDGFLAAVLVPAG-ESAPVGSAIALLAESEDEIPA 132
>05_06_0001 + 24769633-24770148
Length = 171
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -3
Query: 135 QQHLLYFAQLYIGAFLQERLSCQPGLRSSPS 43
Q H L F AFL+ L CQ GLR SPS
Sbjct: 92 QSHPLVFDPFVSVAFLRSSLLCQ-GLRRSPS 121
>01_05_0610 - 23636097-23638958
Length = 953
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 131 CCIQRIQG*FTPDCTKTGTRPST 199
C ++Q F PDC TG+ P+T
Sbjct: 341 CSWNKLQVLFLPDCNLTGSLPTT 363
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 132 QHLLYFAQLYIGAFLQERLSCQPGLRSSPSNLLLESQNPWL 10
+ +L ++ +GA RLS QP SP N L Q P L
Sbjct: 467 KRILSTSKQKLGATRMVRLSSQPSSSVSPCNRALGEQTPRL 507
>02_02_0312 +
8855664-8855807,8856402-8856465,8858399-8858547,
8859258-8859674
Length = 257
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 5 RGNHGF*DSRRRLLGEDLNPGWHERRSCRKAPMYNC 112
RG+ G D R L G N GW R C++ ++C
Sbjct: 221 RGDGGDSDDSRWLAGG--NSGWRSRCGCQRRRRHDC 254
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 151 RMIHPRLHQNRHKTKHLQL 207
R +HPR+H+ HK QL
Sbjct: 827 RWLHPRIHEQTHKLSIAQL 845
>12_02_1080 - 25911521-25911922
Length = 133
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +2
Query: 26 DSRRRLLGEDLNP-GWHER 79
+ RRRL GE++ P GW ER
Sbjct: 62 ERRRRLDGEEVQPLGWEER 80
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 59 NPGWHERRSCRKAPMYNC 112
N GWH SC KA Y C
Sbjct: 157 NCGWHICSSCEKAVHYMC 174
>02_02_0404 +
9876703-9877314,9877599-9877838,9877951-9878073,
9878195-9878374
Length = 384
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 118 FCTIIHRSFPTGTP-FVP 68
FC + H ++P+GTP +VP
Sbjct: 58 FCELPHMAYPSGTPTYVP 75
>11_01_0667 +
5436764-5437384,5437684-5437923,5438037-5438159,
5438301-5438480
Length = 387
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -2
Query: 118 FCTIIHRSFPTGTP-FVP 68
FC + H ++P GTP +VP
Sbjct: 61 FCELPHMAYPAGTPTYVP 78
>07_03_0301 + 16449586-16449671,16450028-16451135
Length = 397
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 29 SRRRLLGEDLNPGWHERRSCRKAPMYN 109
+RRR+ G++L P W E R + N
Sbjct: 54 NRRRMWGKELAPAWWENFGFRTVDVIN 80
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 32 RRRLLGEDLNPGWHER 79
R R + DL+P WHER
Sbjct: 60 RTRTVPRDLSPQWHER 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,176,236
Number of Sequences: 37544
Number of extensions: 107660
Number of successful extensions: 252
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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