Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N17
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 245 2e-65
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 244 4e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 151 3e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 34 0.096
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.89
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 31 0.89
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.6
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484... 29 3.6
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 27 8.3
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 245 bits (600), Expect = 2e-65
Identities = 112/149 (75%), Positives = 127/149 (85%)
Frame = +2
Query: 44 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 223
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 224 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 403
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 404 IPGVRFKVVKVANVSLLALYKEKKERPRS 490
IPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 240 bits (588), Expect = 5e-64
Identities = 109/141 (77%), Positives = 122/141 (86%)
Frame = +2
Query: 62 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 241
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 242 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 421
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 422 KVVKVANVSLLALYKEKKERP 484
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 244 bits (597), Expect = 4e-65
Identities = 111/143 (77%), Positives = 124/143 (86%)
Frame = +2
Query: 62 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 241
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 242 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 421
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 422 KVVKVANVSLLALYKEKKERPRS 490
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 151 bits (367), Expect = 3e-37
Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +2
Query: 41 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 217
+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVL
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122
Query: 218 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 373
EK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 353 DEVLVAGFGRKGHAVGDIPGVRFKVVK 433
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +1
Query: 13 LIISFPICS-----RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 153
L++SFP+ + R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 170 LLLSFPLSALIAAKRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 435 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 304
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 7 GVLIISFPICSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQ 135
G S P+C ++ +RY N + HG+Q R + A G Q
Sbjct: 159 GATQFSCPVCRKTFNRYNNLQMHMWGHGSQYRRGGTAALRGAQ 201
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 278 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 180
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>03_05_1163 -
30847591-30847663,30847909-30848042,30848443-30848484,
30848613-30848654,30849362-30849461,30849605-30849666,
30851001-30851015,30851098-30851179,30853510-30853694
Length = 244
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 433 GSKRVASSSVQRKEGEAQVIGLHCDKVSD-PLPPPGG 540
G V SS + E Q +GLH V+ P PPPGG
Sbjct: 201 GGGGVFSSEPPQPEHFFQALGLHAVDVNQPPAPPPGG 237
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 40 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 138
R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 283 RTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,274
Number of Sequences: 37544
Number of extensions: 403169
Number of successful extensions: 1129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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