Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_N16
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    85   9e-18
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   1.9  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    27   2.6  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   5.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   5.9  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   5.9  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   7.8  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 84.6 bits (200), Expect = 9e-18
 Identities = 50/127 (39%), Positives = 79/127 (62%)
 Frame = +3

Query: 45  MKYNKLVTSSK*KTGRGISVPLLTSDEYLCQHHSPKS**QKFNVKSMPIRKDDEVQVVRG 224
           MK+++ VTSS+ K  +       +    L      K   +++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 225 HYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDR 404
             KG++    G + T +Y  KKF++ IER+ REKANGAS  VGI  SK VI KL ++KDR
Sbjct: 61  SNKGRE----GKI-TSVYR-KKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDR 114

Query: 405 KTILDRR 425
           K ++ R+
Sbjct: 115 KDLIVRK 121


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 67   RRPNEKQEEAFQCPFSHPTSTYVSTTLQRVNDKSST*NLCQSAKTTKCRLYE 222
            ++ NE++ ++FQ   S+ TS Y +TT      K+   +L +     K RL E
Sbjct: 962  KKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLRE 1013


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 195 KDDEVQVVRGH--YKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKA 329
           KD  +Q + G   Y  +QV +H P+    Y C ++ V I+ + + ++
Sbjct: 128 KDPNLQKLHGIAVYAAEQVCHHPPISAYFYLCPEYKVRIDGVVKPRS 174


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 83  NRKRHFSAPSHIRRVLMSAPLSKELMTKVQREIYANPQRRRSAGCTRT 226
           N+ RHF + S I+++ M     ++ M +    +Y N Q   +    ++
Sbjct: 584 NQTRHFHSVSEIKKLPMGTDELEKSMVRPSTAMYINRQNENAVSIDKS 631


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 96  CLFLFFIWTTSRAYCTSF 43
           C F  FIWTT + Y  SF
Sbjct: 556 CFFRTFIWTTYKLYPFSF 573


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 570 WSFGLCVLCCTFVIVLTV 517
           W+ G+C++ C F+++L V
Sbjct: 141 WAPGICLISCWFILLLEV 158


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 356  DTDVHTGSIGFLTLDPFDVDYKLLT 282
            DT ++  SIG LT  P +++ KLLT
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLT 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,253
Number of Sequences: 5004
Number of extensions: 46410
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)