Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N16
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0323 - 2459854-2460306 113 7e-26
01_01_0263 + 2136858-2137331 112 2e-25
11_01_0317 - 2365493-2365786,2365825-2365953 84 7e-17
05_06_0226 + 26561673-26562908 29 3.4
02_01_0621 + 4656067-4656414 29 3.4
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 4.6
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 28 6.0
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 28 6.0
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 28 6.0
10_06_0080 + 10441055-10443856 27 8.0
03_01_0064 + 516040-516162,517571-517668,518000-518030,519051-51... 27 8.0
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 8.0
>12_01_0323 - 2459854-2460306
Length = 150
Score = 113 bits (273), Expect = 7e-26
Identities = 68/142 (47%), Positives = 91/142 (64%)
Frame = +3
Query: 45 MKYNKLVTSSK*KTGRGISVPLLTSDEYLCQHHSPKS**QKFNVKSMPIRKDDEVQVVRG 224
MK N VTSS+ K + + L K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 225 HYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDR 404
YKG++ G + +Y +++V+++ERI REK NG++V VGIHPSK V+ KLK++KDR
Sbjct: 61 SYKGRE----GKV-VQVYR-RRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDR 114
Query: 405 KTILDRRASGRLAALGKDNGKY 470
K ILDR+ASGR A K GK+
Sbjct: 115 KAILDRKASGR--AADKAKGKF 134
>01_01_0263 + 2136858-2137331
Length = 157
Score = 112 bits (269), Expect = 2e-25
Identities = 67/142 (47%), Positives = 90/142 (63%)
Frame = +3
Query: 45 MKYNKLVTSSK*KTGRGISVPLLTSDEYLCQHHSPKS**QKFNVKSMPIRKDDEVQVVRG 224
MK N VTSS+ K + + L K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 225 HYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDR 404
YKG++ G + +Y +++V+++ERI REK NG++V VGIHPSK V+ KLK++KDR
Sbjct: 61 SYKGRE----GKV-VQVYR-RRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDR 114
Query: 405 KTILDRRASGRLAALGKDNGKY 470
K ILDR+A GR A K GK+
Sbjct: 115 KAILDRKARGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 84.2 bits (199), Expect = 7e-17
Identities = 46/86 (53%), Positives = 63/86 (73%)
Frame = +3
Query: 213 VVRGHYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKM 392
VVRG YKG++ G + +Y +++V+++ERI REK NG++V VGIHPSK V+ KLK+
Sbjct: 44 VVRGSYKGRE----GKV-VQVYR-RRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKL 97
Query: 393 NKDRKTILDRRASGRLAALGKDNGKY 470
+KDRK ILDR+ASGR A K GK+
Sbjct: 98 DKDRKAILDRKASGR--AADKAKGKF 121
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +2
Query: 80 KNRKRHFSAPSHIRRVLMSAPLSKELMTK 166
K RK HF+APS +RRVLMSA LS EL K
Sbjct: 13 KCRKAHFTAPSSVRRVLMSAALSTELRHK 41
>05_06_0226 + 26561673-26562908
Length = 411
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -2
Query: 357 GYRRTHWLHWLSHAGSFRCRLQTSYRGTALYVKARGCPPAGLYNVLV 217
G+RRTH +L HA R R SY G L++ G P G +VLV
Sbjct: 82 GWRRTHPF-FLPHAAR-RARCFGSYDGAWLFLAVDGQGPRGEDHVLV 126
>02_01_0621 + 4656067-4656414
Length = 115
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 324 SHAGSFRCRLQTSYRGTALYVKARGCPPA 238
+H GSFRCRL S TA A PPA
Sbjct: 37 THPGSFRCRLHRSPAATAKAKAAIVPPPA 65
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -2
Query: 393 SSLTSQSHTLKGGYRRTHWLHWLSHAGSFRCRLQTSYRGTALYVKA 256
+S T S GGYRR W S GS + TS + TA V A
Sbjct: 673 ASSTRASSRRSGGYRRKGWAAPASGGGSVGVGILTSGKPTAAAVAA 718
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 375 SHTLKGGYRRTHWLHWLSHAGSFRCRLQTSYRGTALYV--KARGCPPAGLYNVLVQ 214
++ LKG +WLS+ + C LQ + R L+ R P G+ + +VQ
Sbjct: 1105 NNVLKGEEADGRLPYWLSNTSALLCLLQKNLRSNGLFATPSGRSGGPLGIGDKIVQ 1160
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 456 LYQEPLACH*LCDPGLFYGLYSSLTSQSHTLKGGY 352
L +E + C CDPGL G+ S S S++ Y
Sbjct: 393 LVEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHY 427
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 423 CDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAG 313
C G+ G+ +TS+ L+G RR H +HW H+G
Sbjct: 42 CKDGIVLGVEKLVTSKM-MLEGSNRRIHSVHW--HSG 75
>10_06_0080 + 10441055-10443856
Length = 933
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 159 INSLESGADISTRRM*EGALKCLFLFFIWTTSRAYCTSFCRFSLQ 25
+ LE ++S RR+ G L+ + IW +YC S C SLQ
Sbjct: 697 LQGLEVQDEVSLRRL--GELRQMRSIRIWGVKESYCESLCE-SLQ 738
>03_01_0064 +
516040-516162,517571-517668,518000-518030,519051-519150,
519750-519820,519981-520124,520541-520609
Length = 211
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 98 FSAPSHIRRVLMSAPLSKELMTKVQREI 181
F +PS RR+++SAP ++ELM K++ +
Sbjct: 166 FISPS-ARRIIVSAPTAQELMDKLEEYV 192
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 412 IVLRSLFIFNFTITHFEGWIPTYTLAPLAFSRWILSM*TTNFLQGYSPV 266
I+L L +F +F W+P Y+ A LAF ++ T +F QG S V
Sbjct: 45 ILLAVLTVFERVGDNFVSWLPMYSEAKLAFIVYLWYPKTQHF-QGTSYV 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,788
Number of Sequences: 37544
Number of extensions: 316649
Number of successful extensions: 728
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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