Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N16
(571 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical pr... 97 8e-21
Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical p... 67 7e-12
Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical pr... 67 7e-12
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 27 7.2
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 27 7.2
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 27 9.5
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 27 9.5
>Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical
protein F28C6.7a protein.
Length = 142
Score = 97.1 bits (231), Expect = 8e-21
Identities = 49/102 (48%), Positives = 73/102 (71%)
Frame = +3
Query: 165 KFNVKSMPIRKDDEVQVVRGHYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASV 344
K ++++PIR DDEV V+RG +KG N G + Y KKFV++I++I REKANG++V
Sbjct: 41 KHGIRAIPIRTDDEVVVMRGRHKG----NTGRVLR-CYR-KKFVIHIDKITREKANGSTV 94
Query: 345 YVGIHPSKCVIVKLKMNKDRKTILDRRASGRLAALGKDNGKY 470
++GIHPSK I KLK++KDR+ +++R+A+GR G GK+
Sbjct: 95 HIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +2
Query: 80 KNRKRHFSAPSHIRRVLMSAPLSKELMTK 166
K+RK HF+APSH RR +MSAPL+KEL TK
Sbjct: 13 KSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical
protein F28C6.7c protein.
Length = 109
Score = 67.3 bits (157), Expect = 7e-12
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +3
Query: 165 KFNVKSMPIRKDDEVQVVRGHYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASV 344
K ++++PIR DDEV V+RG +KG N G + Y KKFV++I++I REKANG++V
Sbjct: 41 KHGIRAIPIRTDDEVVVMRGRHKG----NTGRVLR-CYR-KKFVIHIDKITREKANGSTV 94
Query: 345 YVGIHPSK 368
++GIHPSK
Sbjct: 95 HIGIHPSK 102
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +2
Query: 80 KNRKRHFSAPSHIRRVLMSAPLSKELMTK 166
K+RK HF+APSH RR +MSAPL+KEL TK
Sbjct: 13 KSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical
protein F28C6.7b protein.
Length = 106
Score = 67.3 bits (157), Expect = 7e-12
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +3
Query: 165 KFNVKSMPIRKDDEVQVVRGHYKGQQVGNHGPLRTGLYPCKKFVVYIERIQREKANGASV 344
K ++++PIR DDEV V+RG +KG N G + Y KKFV++I++I REKANG++V
Sbjct: 41 KHGIRAIPIRTDDEVVVMRGRHKG----NTGRVLR-CYR-KKFVIHIDKITREKANGSTV 94
Query: 345 YVGIHPSK 368
++GIHPSK
Sbjct: 95 HIGIHPSK 102
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +2
Query: 80 KNRKRHFSAPSHIRRVLMSAPLSKELMTK 166
K+RK HF+APSH RR +MSAPL+KEL TK
Sbjct: 13 KSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 116 IRRVLMSAPLSKELMTKVQREIYANPQRRRSAGCTRTL 229
+ + L A +E +T++Q+ Y NPQ + CT L
Sbjct: 369 MEKQLEQAIQGREGITRLQQAYYTNPQHGNPSACTEPL 406
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 116 IRRVLMSAPLSKELMTKVQREIYANPQRRRSAGCTRTL 229
+ + L A +E +T++Q+ Y NPQ + CT L
Sbjct: 369 MEKQLEQAIQGREGITRLQQAYYTNPQHGNPSACTEPL 406
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 251 VAHLLAFIMSSYNLHFVVFADWHRFHVE 168
V ++AF++ ++ ++F+ F WH+ VE
Sbjct: 518 VIFVVAFLIITFGINFIGFIHWHQAGVE 545
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 251 VAHLLAFIMSSYNLHFVVFADWHRFHVE 168
V ++AF++ ++ ++F+ F WH+ VE
Sbjct: 518 VIFVVAFLIITFGINFIGFIHWHQAGVE 545
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 251 VAHLLAFIMSSYNLHFVVFADWHRFHVE 168
V ++AF++ ++ ++F+ F WH+ VE
Sbjct: 518 VIFVVAFLIITFGINFIGFIHWHQAGVE 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,707
Number of Sequences: 27780
Number of extensions: 271797
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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