Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N15
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 3e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 49 3e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 2e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 32 0.038
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 31 0.066
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 28 0.62
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 28 0.82
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 28 0.82
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 1.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.4
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 4.4
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 4.4
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.4
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 7.6
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 92.7 bits (220), Expect = 3e-20
Identities = 38/82 (46%), Positives = 57/82 (69%)
Frame = +2
Query: 218 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 397
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 398 NFPDYVCQAIKSMGYKDPTPIQ 463
FP+YV + +K +G++ PTPIQ
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQ 149
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 3e-07
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 245 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 421
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 422 AIKSMGYKDPTPIQA 466
I S+GY+ PT IQA
Sbjct: 432 VINSLGYEKPTSIQA 446
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 43.6 bits (98), Expect = 2e-05
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +2
Query: 329 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 463
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 32.3 bits (70), Expect = 0.038
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 386 FEEANFPDYVCQAIKSMGYKDPTPIQ 463
F+E D +C+A + +G+K PTPIQ
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQ 73
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.5 bits (68), Expect = 0.066
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 344 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 463
V VSG ++ P+ F ++ Q IK GY PTP+Q
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQ 196
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 28.3 bits (60), Expect = 0.62
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 341 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 466
E+T S E N + FEE N + + + I + GY+ P+ +Q+
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQS 49
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 0.82
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 314 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 463
E ED R + V ++ + IE F + + + +AIK MG++ T IQ
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQ 116
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.9 bits (59), Expect = 0.82
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -3
Query: 427 YCLTHIIWKVCLFKMFNRIRYFNATNSDFVFVSIVLYFIW 308
+ ++++I + L ++F+ +R+ N ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 326 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 466
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQA 193
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 308 PYEVEDYRNKHEVTVSGVE-VPNPI 379
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 386 FEEANFPDYVCQAIKSMGYKDPTPIQA 466
F+ N ++ A+ + G+K TP+QA
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQA 29
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-PDYVCQAIKSMGYKD 448
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 287 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 445
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 434 YFLLLDTHNLESLPLQNVQ*D*VLQRH 354
Y LLLD N P NVQ D L +H
Sbjct: 167 YQLLLDDQNFTFTPRLNVQTDEELMKH 193
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 248 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 376
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,959
Number of Sequences: 5004
Number of extensions: 31172
Number of successful extensions: 147
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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