Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N13
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 237 6e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 134 9e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 130 1e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 124 7e-30
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 28 0.84
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 1.1
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 27 1.5
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 27 1.9
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.9
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.6
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.5
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 4.5
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 4.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 5.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.8
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 25 7.8
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 7.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 237 bits (581), Expect = 6e-64
Identities = 102/134 (76%), Positives = 118/134 (88%)
Frame = +1
Query: 130 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 309
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG YV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 310 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 489
PRAVLVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 490 RKEAESCDCLQGFQ 531
R+EAE+CD LQGFQ
Sbjct: 121 RREAEACDALQGFQ 134
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 134 bits (324), Expect = 9e-33
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Frame = +1
Query: 130 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGT 303
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 304 YVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 483
YVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 484 VVRKEAESCDCLQGF 528
+R+ A++C LQGF
Sbjct: 121 KIRRIADNCSGLQGF 135
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 130 bits (314), Expect = 1e-31
Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 6/139 (4%)
Frame = +1
Query: 130 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 291
MRE++ V GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 292 SGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 471
G +VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 472 SVLDVVRKEAESCDCLQGF 528
SVL+ +R+ A++C LQGF
Sbjct: 121 SVLERIRRMADNCSGLQGF 139
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 124 bits (300), Expect = 7e-30
Identities = 52/134 (38%), Positives = 90/134 (67%), Gaps = 2/134 (1%)
Frame = +1
Query: 133 REIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYVP 312
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 313 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 486
RA+L+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 487 VRKEAESCDCLQGF 528
+ +EA+ D L+GF
Sbjct: 122 IDREADGSDSLEGF 135
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 28.3 bits (60), Expect = 0.84
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 149 SRPDNAETRSELSSGRSSLMNMELIPLAHTMVTLTYSWSVLMFITMKHPEALMYLAPFLL 328
++ D + +L+ G + L ++I + T VTL L + P+ L+ AP L
Sbjct: 157 AKEDGRDAIIDLTRGLADLCTKKVI--SSTQVTLELIDKELKESVIPEPDLLIIFAPLLK 214
Query: 329 TSSLAPWTL 355
PW L
Sbjct: 215 LQGFPPWQL 223
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 228 SGINSMFIRDDLPELSSDLVSALSGLDVDDFPHLYLCE 115
+ I+ + + D L +L S L++A++ D DD +CE
Sbjct: 345 NSISGLSVIDVLRDLGSHLINAVNSFDADDQTWYNMCE 382
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -2
Query: 215 PCSSEMISQNLA-PIWFPHCPAWTW 144
P SSE I Q LA + PH WTW
Sbjct: 263 PSSSEEIYQKLANEVDVPHAALWTW 287
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 51 FNRPDRTINVTREILSNNFY*LHINKDEGNRPRPGRTMRKP 173
F+RP T NV L+N F L NKD + P T++ P
Sbjct: 203 FSRPPPTPNVAGLSLNNFFCPLPENKDNKSSPFGSATVQTP 243
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 169 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 270
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +2
Query: 278 ITMKHPEALMYLAPFLLTSSLAPW-TLSAQDPLDKSFAPITSFSDSPVPVTTGLRDTTQR 454
+T EA + +++ W +L + L + S S + G +T Q
Sbjct: 755 LTKIFSEARKNAPSIIFINNVEKWPSLFSHSFLSMFLLLLDSISPLEPVMLLGFANTNQE 814
Query: 455 VLSSSIPSWM*FARKQSHVIVYKDSNS 535
LSS++ SW R + H + + D +S
Sbjct: 815 KLSSTVRSWFPSHRSEYHDLSFPDYSS 841
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 364 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 465
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 433 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 522
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 506 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 369
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 385 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 516
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 422 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 327
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 212 MELIPLAHTMVTLTYSWSVLMFI 280
M+ PL + +T+SWSV++F+
Sbjct: 161 MQTFPLGKFVGLVTFSWSVIVFL 183
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 317 PFLLTSSLAPWTLSAQDPLDKSFAPITSFSDSPVPVTTGLRDTTQRVLSSSIPS 478
P LTSS + S+QD P T + + P T+ T+ LSS++P+
Sbjct: 278 PVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPT 331
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 530 WNPCRQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 387
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2
Query: 173 WFPHCPAWTWTI 138
WF HCP WT+
Sbjct: 7 WFIHCPPLQWTL 18
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 344 PWTLSAQDPLDKSFAPITSFSDSPVPV 424
P S +D L + +T+F SPVP+
Sbjct: 308 PLLASGRDKLGQQLKSVTNFGKSPVPL 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,756
Number of Sequences: 5004
Number of extensions: 52615
Number of successful extensions: 178
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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