Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_N12
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 29 0.39
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 29 0.51
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 28 0.90
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 26 2.7
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 2.7
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 2.7
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 26 2.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.6
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 4.8
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 4.8
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.3
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac... 25 6.3
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 25 6.3
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 8.4
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 412 YTYKYSTYPEDLLVAVNMYTQQKLLSRKTLKQVSI 308
Y YK+ST+ + L A ++ Q L+SRK Q+ +
Sbjct: 459 YEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQLPL 493
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 28.7 bits (61), Expect = 0.51
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 172 FVEDPNHYCIG--QMNRNISNHEEALIPVAVVCFEKISKTNDIETSGILTL 318
FV+ C+G +++ A++P+A V E + DIET+GI+ +
Sbjct: 141 FVDSGKISCVGLSEVSAETIKRAHAVVPIAAVEVEYSLFSRDIETNGIMDI 191
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 0.90
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 178 EDPNHYCIGQMNRNISNHEEALIPVAVVCFEKISKTNDIETSGILTLV 321
E PN+YC QM ++ E ++ V ++ K + N + SG++ V
Sbjct: 909 ETPNYYCFAQM-EYLTVTEVKMLNVLMISLSKFIR-NSLRNSGLMDFV 954
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 172 FVEDPNHYCIGQMNRNISNHEEAL--IPVAVVCFEKISKTNDIETSGIL-TLVSVFFLIA 342
FV+ C+G + + + AL +P+A V E + DIE +GIL T + I
Sbjct: 141 FVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIEKNGILDTCTQLSIPII 200
Query: 343 TFAVYTY 363
+A + +
Sbjct: 201 AYAPFCH 207
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 103 RMLLEDIILTGDKVSTRDSPGFVFVEDPNHYCIGQMNRNISN 228
R LL ++ T +SP F+ + + I Q+N+NI N
Sbjct: 166 RFLLTQMVATSSLHVWSESPFFIRIRSSYEHLILQINKNIYN 207
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 214 RNISNHEEALIPVAVVCFEKISKTNDIETSGILTLVSVFFLIATFAVYTYL 366
RNI H I +A+ C + +T + +++SV FL+ T A+ ++
Sbjct: 467 RNIERHFRLFIRLALFCVLTTYNVSLSQTILLTSIMSVVFLLQTGALAPFI 517
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 164 GSSSLKIQITTALDK*TEISLTMKKL 241
G SS +Q TA +K ISL MKKL
Sbjct: 473 GRSSFYVQQKTAAEKKEHISLIMKKL 498
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 238 ALIPVAVVCFEKISKTND 291
AL+PV +VC IS+T++
Sbjct: 415 ALVPVLIVCMRSISETSE 432
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 4.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 17 GNVVQTGKLSNREDIAT-PNTELT*PVQMDECCLKILFLQVTKSPHEIHQGS 169
GNV K+S+ ED+AT +T + P +E + Q T PH IH+G+
Sbjct: 489 GNVFLWIKISSNEDVATIDSTNILRPALQEE------WKQQTSLPH-IHKGA 533
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 103 RMLLEDIILTGDKVSTRDSPGFVFVEDPNHYCIGQMNRNISNHE 234
R DI T S + PGF E N++ + N + NH+
Sbjct: 684 RPQFSDISSTASSNSLSNKPGFAHSESRNYHTHDEDNSSDDNHK 727
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 120 IFKQHSSICTGYVNSVLGVAISS 52
+FK HSS+ G+V L + + +
Sbjct: 163 LFKDHSSLAKGHVQEFLSIVVEN 185
>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
L35a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 108
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 89 PVQMDECCLKILFLQVTKSPHEIHQGSSSLKIQ 187
P Q +K L +S H IH G+S +KI+
Sbjct: 2 PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIE 34
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 89 PVQMDECCLKILFLQVTKSPHEIHQGSSSLKIQ 187
P Q +K L +S H IH G+S +KI+
Sbjct: 2 PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIE 34
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 112 LEDIILTGDKVSTRDS-PGFVFVEDPNHYCIGQ 207
L + + GD VS+ DS GF VED + Y IGQ
Sbjct: 94 LTNYTVEGD-VSSEDSIGGFFTVEDDDLYSIGQ 125
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 390 YVLYLYVYQHGFRISIIGHTAVEPWI 467
+++Y Y ++ GF + ++G A PW+
Sbjct: 566 FIVYSYFHREGFSVILMG-LAAWPWL 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,869
Number of Sequences: 5004
Number of extensions: 43509
Number of successful extensions: 123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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